Human Immunodeficiency Virus Type 1 Reverse Transcriptase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-216
PRO-217
23.1
23.0
-6.1
-3.5
145.6
153.7
-39.4
PRO-217
ASP-218
23.2
22.6
-59.0
-113.4
98.2
98.0
-50.6
ASP-218
LYS-219
22.2
20.3
-168.2
-51.4
104.4
99.0
401.9
LYS-219
LYS-220
18.9
20.7
-5.2
163.5
33.3
50.9
-363.3
LYS-220
HIS-221
17.3
19.2
-81.7
178.3
110.0
98.5
81.9
HIS-221
GLN-222
13.8
15.7
22.1
-65.3
110.1
13.4
-103.7
GLN-222
LYS-223
15.6
15.7
-19.5
-166.2
92.4
88.5
-34.2
LYS-223
GLU-224
13.3
12.5
47.6
88.6
28.9
77.4
267.2
GLU-224
PRO-225
11.5
9.1
20.9
-28.8
101.7
146.6
19.8
PRO-225
PRO-226
8.1
7.2
45.0
-47.3
80.0
111.9
-11.4
PRO-226
PHE-227
5.6
4.2
-30.0
45.0
72.9
90.7
-55.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-237
LYS-238
5.9
3.7
-64.6
-11.1
88.9
110.9
-28.2
LYS-238
TRP-239
3.7
3.3
36.6
-31.0
106.7
112.1
0.4
TRP-239
THR-240
2.0
4.5
10.8
-20.8
130.0
119.2
28.5
THR-240
VAL-241
4.5
7.6
46.7
-39.9
85.9
71.7
27.1
THR-240
VAL-241
4.5
7.6
46.7
-39.9
85.9
71.7
27.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-240
VAL-241
4.5
7.6
46.7
-39.9
85.9
71.7
27.1
THR-240
VAL-241
4.5
7.6
46.7
-39.9
85.9
71.7
27.1
VAL-241
GLN-242
7.6
10.1
11.4
-32.9
22.3
13.5
-93.5
GLN-242
PRO-243
8.2
9.7
107.6
-0.2
67.0
44.2
194.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-311
GLU-312
16.0
14.8
-100.8
-68.3
115.1
119.0
512.0
GLU-312
PRO-313
15.0
11.8
-105.7
-18.2
110.5
131.0
-90.3
PRO-313
VAL-314
11.2
13.9
-87.1
-54.6
158.9
150.0
-391.4
VAL-314
HIS-315
10.2
12.8
-41.4
4.2
100.6
91.5
-25.5
HIS-315
GLY-316
7.5
9.3
-30.2
-129.3
147.8
154.3
561.1
GLY-316
VAL-317
7.1
7.3
-4.4
-31.1
107.3
144.5
-68.1
VAL-317
TYR-318
5.7
7.6
9.1
6.4
36.8
67.9
5.1
TYR-318
TYR-319
3.4
6.7
-156.8
144.0
150.1
120.4
-51.2
TYR-319
ASP-320
3.9
4.1
35.2
65.3
65.7
14.0
161.9
ASP-320
PRO-321
6.0
4.1
33.5
-66.7
29.0
86.0
-49.3
PRO-321
SER-322
5.3
5.3
30.9
87.6
56.7
22.4
-560.9
SER-322
LYS-323
8.6
5.6
139.6
-122.8
100.3
68.1
14.3
LYS-323
ASP-324
10.5
8.6
-158.9
-49.6
99.4
74.2
17.7
ASP-324
LEU-325
11.7
11.1
-44.1
90.9
37.1
103.5
47.8
LEU-325
ILE-326
11.7
13.0
-151.6
-179.6
88.1
62.4
330.8
ILE-326
ALA-327
15.2
12.4
-83.7
59.8
47.9
86.3
-443.5
ALA-327
GLU-328
16.7
16.2
31.0
-36.0
105.0
128.8
29.8
GLU-328
ILE-329
19.9
17.6
-25.0
6.5
61.1
87.2
-7.1
ILE-329
GLN-330
22.5
21.0
1.8
27.0
119.4
127.0
-75.6
GLN-330
LYS-331
25.3
23.4
-66.4
14.9
73.8
58.3
-57.8
LYS-331
GLN-332
28.2
25.0
-79.6
49.5
2.5
68.3
105.7
GLN-332
GLY-333
28.5
27.3
-104.7
-150.7
73.6
63.0
383.7
GLY-333
GLN-334
30.5
30.1
-44.5
-121.5
132.4
11.2
-181.6
GLN-334
GLY-335
33.4
29.2
1.6
-62.0
50.8
100.7
-117.9
GLY-335
GLN-336
31.1
32.8
-25.2
-33.8
65.1
121.7
-0.3
GLN-336
TRP-337
27.8
30.6
80.1
-11.3
62.9
54.4
101.5
TRP-337
THR-338
25.1
27.7
-3.3
-14.2
73.5
81.2
22.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees