Groel

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-188   VAL-189  11.9 11.4 3.9 23.7 67.9 49.3 21.6
 VAL-189   VAL-190  8.5 8.4 13.1 -66.0 44.1 37.1 -46.3
 VAL-190   GLU-191  8.0 9.3 24.5 51.7 93.6 39.3 41.3
 GLU-191   GLY-192  6.8 7.7 -9.6 123.6 153.8 115.4 130.5
 GLY-192   MET-193  5.7 7.0 -36.3 -64.4 142.0 104.5 -48.5
 MET-193   GLN-194  5.8 5.8 44.5 5.0 79.7 83.6 13.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-372   ALA-373  1.9 1.5 -104.5 146.1 135.6 142.3 43.7
 ALA-373   GLY-374  3.6 3.7 20.6 17.4 30.4 31.0 34.2
 GLY-374   GLY-375  1.4 0.9 119.4 -156.1 85.5 74.4 -0.2
 GLY-375   VAL-376  2.3 3.8 9.2 -6.2 98.8 69.5 0.4
 VAL-376   ALA-377  6.0 6.5 -7.0 45.0 135.8 139.0 29.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees