Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-109   ILE-110  6.9 6.9 -1.3 5.1 128.2 131.7 58.0
 ILE-110   SER-111  9.1 9.2 5.9 -13.7 52.9 52.7 25.9
 SER-111   ILE-112  11.0 11.0 -15.5 10.6 131.3 137.8 -57.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-189   GLU-190  9.3 9.4 22.4 -14.1 64.0 67.9 61.9
 GLU-190   SER-191  6.1 6.1 -7.6 2.6 46.4 50.6 34.6
 SER-191   THR-192  5.4 5.5 3.4 0.8 120.3 117.1 -58.5
 THR-192   SER-193  1.9 1.9 -5.5 3.8 40.2 36.9 18.9
 SER-193   ILE-194  2.9 2.9 -5.7 12.0 44.2 41.6 -48.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  13.0 13.1 -5.2 8.9 155.4 160.9 68.1
 ASP-212   SER-213  10.4 10.7 8.8 0.9 98.7 93.5 -142.9
 SER-213   LYS-214  7.6 7.5 13.7 -0.4 55.4 60.6 210.2
 LYS-214   GLY-215  4.0 4.0 -19.5 23.3 62.6 65.7 -88.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees