Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-109   ILE-110  0.7 1.5 12.2 -0.3 55.9 57.3 50.6
 ILE-110   SER-111  3.7 4.0 -6.7 17.4 112.5 117.8 101.6
 SER-111   ILE-112  5.7 5.6 -24.2 13.0 130.5 124.9 -46.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-191   THR-192  0.8 1.2 4.0 1.7 133.2 132.3 -20.0
 THR-192   SER-193  3.2 2.8 -2.2 -2.2 34.3 31.7 13.3
 SER-193   ILE-194  3.1 2.5 2.1 4.7 120.6 120.0 0.1
 ILE-194   GLU-195  1.3 1.8 -5.0 -21.0 123.0 127.0 -99.1
 ILE-194   GLU-195  1.3 1.8 -5.0 -21.0 123.0 127.0 -99.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-194   GLU-195  1.3 1.8 -5.0 -21.0 123.0 127.0 -99.1
 ILE-194   GLU-195  1.3 1.8 -5.0 -21.0 123.0 127.0 -99.1
 GLU-195   TYR-196  2.7 2.9 26.6 -13.6 31.3 43.8 64.6
 TYR-196   VAL-197  2.8 2.6 2.8 -1.9 45.8 39.0 12.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-198   GLN-199  3.0 3.2 -5.4 -12.2 52.7 46.9 59.4
 GLN-199   ARG-200  3.7 3.6 7.3 19.3 151.3 136.5 -96.0
 ARG-200   ASN-201  0.9 0.9 -157.6 23.6 69.1 48.4 409.2
 CYS-202   ASN-203  5.8 5.0 46.1 -8.6 79.1 78.0 67.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-210   ILE-211  5.8 6.5 17.4 -6.3 32.8 36.5 34.5
 ILE-211   ASP-212  6.3 7.0 -2.6 10.1 142.0 144.5 47.6
 ASP-212   SER-213  3.1 3.9 -4.6 17.2 71.2 73.6 -26.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees