Threonyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-408   SER-409  8.9 8.6 -1.3 -9.2 91.1 92.8 -4.7
 SER-409   THR-410  12.7 12.4 -3.2 5.0 152.5 158.0 3.4
 THR-410   PHE-411  12.9 12.5 -1.1 2.4 96.0 100.6 3.9
 PHE-411   GLY-412  12.3 11.9 8.5 16.5 135.9 132.0 -106.5
 GLY-412   PHE-413  14.5 14.4 -10.6 -34.9 46.1 33.1 181.9
 PHE-413   GLU-414  12.3 11.9 -21.0 -12.4 25.0 47.5 135.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-417   VAL-418  6.0 5.8 5.9 -6.0 91.6 99.8 -8.9
 VAL-418   LYS-419  2.5 2.5 7.7 -5.2 44.5 46.4 4.8
 LYS-419   LEU-420  1.5 1.0 5.0 -4.5 94.8 99.9 20.8
 LEU-420   SER-421  4.0 4.5 5.1 -2.3 78.9 81.1 15.8
 SER-421   THR-422  7.2 7.5 1.9 0.4 74.8 74.9 2.6
 THR-422   ARG-423  10.0 10.4 -3.7 2.5 78.6 75.1 -4.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-464   LYS-465  10.9 11.2 7.4 -13.0 44.7 46.4 -16.3
 LYS-465   ILE-466  7.6 8.0 7.9 -0.9 109.6 111.0 9.8
 ILE-466   GLU-467  4.4 4.9 -1.1 -5.2 133.4 134.6 -32.2
 GLU-467   PHE-468  2.3 2.2 8.2 -5.1 85.3 92.8 54.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLN-479   CYS-480  5.7 5.6 4.6 -19.2 155.3 154.6 59.3
 CYS-480   GLY-481  3.2 3.2 30.6 -6.8 85.3 87.5 48.6
 GLY-481   THR-482  0.7 0.7 -3.2 6.8 136.3 130.1 22.5
 THR-482   VAL-483  3.9 4.2 -11.0 3.3 87.3 83.3 11.1
 VAL-483   GLN-484  7.1 7.2 -2.7 0.6 127.0 125.7 -27.6
 GLN-484   LEU-485  10.0 10.2 -5.1 5.1 93.4 93.8 -1.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees