Nad Dependent Epimerase/dehydratase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-8   LEU-9  4.6 4.5 -0.9 5.0 92.7 94.4 6.0
 LEU-9   ILE-10  6.9 6.7 -1.2 0.4 58.7 61.7 7.1
 ILE-10   VAL-11  7.2 6.8 -4.1 2.6 70.9 72.6 12.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-24   LEU-25  7.0 6.9 3.3 2.1 80.9 79.5 -1.2
 LEU-25   ALA-26  3.4 3.3 -5.8 6.4 31.3 30.8 -10.3
 ALA-26   GLU-27  2.3 2.4 2.8 -4.5 126.3 129.6 16.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-35   THR-36  8.0 7.9 16.7 1.7 126.2 134.2 -161.1
 THR-36   SER-37  9.7 9.8 5.5 6.1 112.2 110.5 -52.9
 SER-37   ASP-38  12.7 12.8 38.6 -172.8 126.2 119.3 785.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-59   GLU-60  20.2 19.8 -146.0 -66.7 27.1 86.7 1492.5
 GLU-60   LEU-61  18.9 18.9 95.5 14.0 93.9 107.9 -213.1
 LEU-61   ALA-62  15.3 15.1 9.2 0.4 106.3 90.9 -28.3
 ALA-62   THR-63  16.4 16.0 10.2 -14.0 159.1 149.0 26.3
 THR-63   VAL-64  18.4 17.9 3.9 7.5 134.5 138.3 -76.2
 VAL-64   VAL-65  15.4 15.0 2.9 7.2 90.0 86.7 -62.2
 VAL-65   GLU-66  13.1 13.3 -21.3 5.2 70.1 65.5 49.1
 VAL-65   GLU-66  13.1 13.3 -21.3 5.2 70.1 65.5 49.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-65   GLU-66  13.1 13.3 -21.3 5.2 70.1 65.5 49.1
 VAL-65   GLU-66  13.1 13.3 -21.3 5.2 70.1 65.5 49.1
 GLU-66   ARG-67  16.2 16.6 3.9 -2.5 176.7 177.2 -4.1
 ARG-67   HIS-68  16.5 16.8 -10.9 4.3 56.9 58.4 17.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-72   VAL-73  5.3 5.3 2.5 2.2 90.2 88.2 62.6
 VAL-73   TYR-74  5.1 4.9 5.0 -1.6 106.3 106.7 -25.7
 TYR-74   LEU-75  4.2 3.8 9.4 -4.7 110.0 107.6 24.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees