Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-107   SER-108  8.4 8.5 -2.9 -11.4 46.2 46.8 32.4
 SER-108   LEU-109  5.7 5.9 14.7 -8.9 63.8 63.7 -17.6
 LEU-109   GLY-110  2.0 2.1 21.1 -43.5 141.1 138.1 68.1
 GLY-110   ILE-111  1.3 1.4 -4.6 7.2 118.5 116.3 -3.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  2.8 3.2 0.4 10.5 116.8 116.3 -14.0
 SER-217   LYS-218  1.2 1.1 7.7 24.2 82.4 94.5 20.7
 LYS-218   GLY-219  3.9 3.4 -13.1 -14.8 36.2 61.2 81.5
 GLY-219   TYR-220  6.6 6.4 -32.8 16.1 68.2 65.8 -6.8
 TYR-220   GLY-221  9.0 8.9 5.5 -19.2 76.3 75.7 -4.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-253   TRP-254  10.8 11.0 -1.2 -5.9 99.5 107.7 6.2
 TRP-254   TRP-255  7.4 7.5 13.0 -5.0 102.1 105.0 -31.0
 TRP-255   TYR-256  5.9 6.1 -53.2 -61.1 117.8 115.4 -199.7
 TYR-256   ASP-257  8.4 9.1 -174.6 37.2 114.1 153.1 807.5
 ASP-257   LYS-258  8.5 10.8 -155.8 -1.5 154.8 134.9 -657.2
 LYS-258   GLY-259  8.8 7.5 8.3 -130.8 76.3 99.0 -0.1
 GLY-259   GLU-260  10.8 7.4 149.5 -73.9 57.1 34.0 245.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees