Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-28   ILE-29  4.0 1.4 -11.8 6.3 56.7 48.0 4.7
 ILE-29   SER-30  3.7 0.7 -26.0 19.0 62.4 64.0 0.2
 SER-30   THR-31  1.7 3.4 -25.6 -3.1 56.8 52.1 45.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-59   THR-60  10.3 10.8 15.4 26.9 49.2 41.1 62.0
 THR-60   ASP-61  8.2 9.3 -5.5 -9.6 70.5 75.4 14.7
 ASP-61   GLU-62  4.7 5.5 -9.8 6.4 88.8 83.6 10.1
 GLU-62   LEU-63  7.3 6.7 -1.3 10.4 37.5 28.1 -17.7
 LEU-63   VAL-64  9.5 8.8 -14.1 0.1 36.3 39.4 26.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees