Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  4.2 3.4 1.7 -4.7 126.0 127.9 0.5
 LEU-109   GLY-110  1.6 1.0 -1.7 22.4 128.5 128.9 46.2
 GLY-110   ILE-111  3.9 4.1 -5.8 -6.0 54.0 51.1 22.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  6.3 6.8 1.1 -6.0 73.6 72.9 -9.1
 SER-217   LYS-218  2.9 3.3 3.0 -21.6 94.9 108.0 18.1
 LYS-218   GLY-219  1.1 1.1 9.7 20.5 64.7 51.0 62.3
 GLY-219   TYR-220  3.8 3.7 21.9 -10.7 71.0 69.9 -2.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-253   TRP-254  11.4 11.2 -5.7 13.6 68.9 71.0 -21.7
 TRP-254   TRP-255  8.1 8.1 0.2 -0.8 93.3 91.2 -12.9
 TRP-255   TYR-256  6.1 6.0 50.9 54.6 126.0 126.2 -239.9
 TYR-256   ASP-257  9.0 8.5 173.1 -39.2 142.5 129.3 914.5
 ASP-257   LYS-258  11.1 7.9 149.7 22.8 137.4 148.3 -739.8
 LYS-258   GLY-259  8.1 8.6 -8.8 134.7 85.3 75.7 -50.7
 GLY-259   GLU-260  6.7 10.1 -141.7 72.0 17.2 51.3 276.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees