Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-108   LEU-109  3.8 3.2 -5.2 5.0 59.0 56.0 0.0
 LEU-109   GLY-110  0.9 0.5 -4.8 19.5 133.3 130.3 36.2
 GLY-110   ILE-111  3.7 4.1 -24.3 7.3 59.1 56.3 35.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-216   SER-217  5.6 6.1 -4.6 -3.9 111.3 109.4 -10.3
 SER-217   LYS-218  2.0 2.5 -3.9 -18.2 90.2 75.1 12.5
 LYS-218   GLY-219  2.0 1.8 26.8 -10.7 60.3 45.5 36.8
 GLY-219   TYR-220  4.3 4.2 2.2 20.0 66.3 75.5 42.4
 TYR-220   GLY-221  7.1 7.3 10.3 -8.4 107.3 113.2 1.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LYS-253   TRP-254  10.3 10.1 11.2 -9.6 109.3 107.9 -21.5
 TRP-254   TRP-255  6.8 6.7 4.8 -8.3 87.5 83.5 -10.1
 TRP-255   TYR-256  5.2 5.3 55.7 46.0 121.8 119.5 -237.6
 TYR-256   ASP-257  8.4 8.0 164.4 -30.6 146.4 125.4 988.0
 ASP-257   LYS-258  10.1 7.8 140.6 4.0 137.5 147.5 -678.8
 LYS-258   GLY-259  6.8 8.6 39.6 88.0 89.3 112.8 -100.9
 GLY-259   GLU-260  6.4 10.0 -98.9 36.3 23.1 46.2 231.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees