Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-105   MET-106  11.9 11.5 3.4 -16.3 121.0 122.4 8.7
 MET-106   THR-107  8.4 8.1 4.2 27.7 41.1 48.3 63.6
 THR-107   LEU-108  7.0 5.7 21.4 -6.8 113.2 116.5 -55.7
 LEU-108   GLY-109  4.0 2.2 -30.4 38.9 134.8 140.2 15.8
 GLY-109   ILE-110  3.0 2.6 -50.3 32.6 58.6 66.8 27.8
 ILE-110   SER-111  5.4 5.1 -1.8 -13.5 61.2 67.1 27.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  13.4 13.4 22.9 -29.6 101.5 90.1 -12.6
 GLY-209   LEU-210  11.8 10.9 13.9 11.3 101.8 117.7 -31.5
 LEU-210   ILE-211  8.3 7.8 2.9 17.0 153.5 151.2 -38.2
 ILE-211   ASP-212  7.8 8.1 176.1 157.5 109.8 135.2 5.5
 ASP-212   SER-213  4.8 4.9 135.3 -104.1 74.0 59.0 51.3
 SER-213   LYS-214  4.5 3.6 -6.8 12.9 79.3 69.7 34.7
 LYS-214   GLY-215  3.1 2.7 16.0 -1.8 41.8 43.0 31.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-251   ARG-252  4.6 4.8 15.3 -4.4 145.9 141.2 -22.7
 ARG-252   GLY-253  5.5 6.2 21.5 -115.9 129.4 131.2 191.2
 GLY-253   ASN-254  2.9 4.0 -31.6 32.4 28.2 73.5 -4.8
 ASN-254   GLY-255  3.8 5.0 89.3 171.2 106.6 51.9 -104.4
 GLY-255   CYS-256  6.8 7.0 52.5 38.9 72.6 117.4 -24.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees