Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  3.7 3.8 -1.9 1.3 129.1 128.7 7.9
 THR-107   LEU-108  2.2 2.2 15.8 -14.9 126.5 124.8 86.9
 LEU-108   GLY-109  4.9 4.9 9.3 -5.7 60.3 55.8 69.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-212   SER-213  11.1 11.1 7.6 1.2 81.4 82.5 76.0
 SER-213   LYS-214  7.5 7.5 -6.4 -0.6 79.4 82.7 47.0
 LYS-214   GLY-215  6.9 6.8 2.5 -2.0 57.2 52.6 65.6
 GLY-215   TYR-216  5.8 5.9 -2.6 8.2 110.7 111.4 -37.6
 TYR-216   GLY-217  8.2 8.2 -0.6 3.6 66.2 65.3 -18.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees