Diaminopimelic Acid Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-142   PHE-143  4.6 4.6 17.8 -21.1 121.7 125.6 -20.7
 PHE-143   TRP-144  1.8 2.0 -6.5 -3.1 15.8 17.3 18.7
 TRP-144   GLY-145  1.8 2.3 4.1 -8.5 123.4 120.6 35.6
 GLY-145   PRO-146  1.7 0.7 15.1 15.1 80.8 74.6 -9.2
 PRO-146   GLY-147  3.5 2.7 -7.4 -9.9 43.0 39.2 27.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-169   LEU-170  4.5 4.8 7.4 -3.6 108.7 113.0 12.4
 LEU-170   PRO-171  4.9 5.1 -20.9 -6.1 4.3 4.7 50.1
 PRO-171   SER-172  4.3 3.8 19.9 -27.9 112.0 115.6 19.7
 SER-172   GLU-173  7.2 6.3 -5.4 -0.7 65.6 67.6 -2.2
 GLU-173   ASP-174  9.3 7.5 -1.8 5.7 7.1 11.3 -9.1
 ASP-174   ALA-175  9.9 8.5 -0.5 4.1 62.0 60.5 -10.9
 ALA-175   LEU-176  6.2 5.0 -6.2 9.2 90.1 92.6 5.7
 LEU-176   GLU-177  6.2 4.8 5.4 -9.0 138.4 132.0 21.9
 GLU-177   LYS-178  9.2 7.8 -14.6 22.7 23.1 18.2 -28.5
 LYS-178   ALA-179  7.0 6.2 0.3 7.8 99.7 97.1 4.2
 ALA-179   ARG-180  4.6 4.0 -19.9 10.0 79.6 76.9 5.5
 ARG-180   ARG-181  8.3 7.7 4.9 -3.1 163.9 159.3 -2.0
 ARG-181   GLY-182  8.7 8.2 22.4 -21.5 126.2 131.5 -1.3
 GLY-182   GLU-183  5.2 5.3 -3.8 -18.7 69.6 72.6 10.5
 GLU-183   ALA-184  4.7 4.1 46.8 -40.1 55.4 50.5 11.2
 ALA-184   GLY-185  2.6 2.7 -5.2 18.0 70.9 73.1 -36.1
 GLY-185   ASP-186  2.0 2.1 173.8 162.4 87.2 84.7 -14.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-239   THR-240  5.4 5.1 37.6 -12.9 65.7 63.6 41.2
 THR-240   GLY-241  2.2 1.7 -15.2 -12.9 64.1 58.4 36.0
 GLY-241   MET-242  1.9 1.7 -24.4 10.9 43.4 43.9 31.6
 MET-242   PRO-243  2.3 2.6 -5.2 0.0 36.9 39.3 10.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees