Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-210   TYR-211  3.2 3.2 -0.6 -3.0 82.6 79.7 182.4
 TYR-211   GLY-212  1.3 1.1 -3.0 2.7 28.2 26.3 -58.7
 GLY-212   SER-213  1.8 1.9 6.4 0.6 142.2 139.5 -149.1
 SER-213   VAL-214  1.3 1.3 -7.2 3.2 96.0 96.9 -5.0
 SER-213   VAL-214  1.3 1.3 -7.2 3.2 96.0 96.9 -5.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-213   VAL-214  1.3 1.3 -7.2 3.2 96.0 96.9 -5.0
 SER-213   VAL-214  1.3 1.3 -7.2 3.2 96.0 96.9 -5.0
 VAL-214   TYR-215  4.3 4.2 -6.5 4.4 109.2 110.4 -32.7
 TYR-215   TYR-216  5.1 5.1 1.4 6.2 4.5 8.0 140.0
 TYR-216   VAL-217  3.7 3.5 -6.4 2.4 117.5 118.5 -134.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-218   ALA-219  8.4 8.4 -8.8 6.6 138.6 140.9 -113.0
 ALA-219   VAL-220  8.2 8.3 5.4 -1.7 29.0 31.2 169.0
 VAL-220   MET-221  7.6 7.6 -4.3 4.0 90.9 93.7 44.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LYS-222   HIS-223  12.7 12.7 -18.5 15.7 14.7 8.7 212.8
 HIS-223   GLU-224  11.4 11.3 -19.2 18.2 57.1 58.9 175.8
 GLU-224   ASN-225  12.5 12.4 -3.4 1.5 103.5 100.8 194.9
 ASN-225   ASP-226  16.0 15.8 16.8 -21.4 58.5 57.6 -125.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-328   GLU-329  19.5 19.5 -4.7 13.5 74.4 69.6 -76.1
 GLU-329   GLN-330  22.2 22.3 -26.3 9.2 51.8 59.4 407.1
 GLN-330   ALA-331  20.3 20.2 7.3 7.1 63.8 62.9 -21.4
 ALA-331   LYS-332  17.4 17.4 -13.2 6.6 122.4 113.0 -186.1
 LYS-332   LYS-333  19.9 19.9 -10.0 12.1 128.1 128.4 200.5
 LYS-332   LYS-333  19.9 19.9 -10.0 12.1 128.1 128.4 200.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LYS-332   LYS-333  19.9 19.9 -10.0 12.1 128.1 128.4 200.5
 LYS-332   LYS-333  19.9 19.9 -10.0 12.1 128.1 128.4 200.5
 LYS-333   ILE-334  21.2 21.3 -3.0 1.4 99.4 100.0 -281.7
 ILE-334   VAL-335  17.9 18.0 -11.6 5.0 39.1 44.0 78.5
 VAL-335   ALA-336  17.4 17.3 -1.0 8.4 82.3 83.4 62.7
 ALA-336   ASN-337  21.1 21.0 -16.4 11.3 129.3 124.5 -118.2
 ASN-337   ASN-338  20.8 20.9 2.2 0.8 102.8 105.3 -151.8
 ASN-338   VAL-339  18.6 18.5 -9.4 10.1 134.6 132.4 143.2
 VAL-339   LYS-340  15.9 16.0 -2.6 -1.8 61.6 62.1 220.8
 LYS-340   TYR-341  12.9 12.9 19.1 -7.6 71.5 65.3 60.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-362   ASN-363  10.4 10.6 4.9 -12.6 137.3 137.1 665.5
 ASN-363   MET-364  12.5 12.1 -26.4 33.4 30.0 32.0 -499.5
 MET-364   VAL-365  10.1 10.2 -9.2 8.4 78.4 84.0 -17.3
 VAL-365   VAL-366  7.2 7.1 -4.7 11.8 63.6 59.4 22.4
 VAL-366   ALA-367  5.7 5.7 7.6 -6.9 112.8 113.9 75.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-372   ASN-373  2.5 2.8 0.4 -7.3 157.0 153.8 -22.5
 ASN-373   ALA-374  5.2 5.3 8.3 2.0 109.7 106.8 75.8
 ALA-374   GLY-375  6.7 6.8 5.0 -8.0 154.2 154.9 -12.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-423   TYR-424  5.0 4.9 -1.7 13.6 166.4 163.2 332.4
 TYR-424   ASN-425  4.7 4.6 -6.8 0.9 99.9 99.4 -249.2
 ASN-425   LEU-426  1.0 0.9 14.4 -15.6 39.4 40.7 131.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-428   GLY-429  4.9 5.0 1.2 2.9 112.9 114.7 -159.2
 GLY-429   ALA-430  5.2 5.2 -11.0 5.2 40.7 44.4 287.5
 ALA-430   ASN-431  6.5 6.4 5.4 -10.0 67.5 69.5 -200.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees