Virb11 Homolog

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-131   ILE-132  21.8 21.5 -22.9 15.2 41.5 44.3 121.5
 ILE-132   ARG-133  21.7 21.7 14.3 -15.6 94.7 90.8 -50.4
 ARG-133   ILE-134  18.7 18.9 24.9 -17.9 107.1 106.0 -30.3
 ILE-134   PRO-135  20.1 19.9 -1.9 -5.5 62.3 56.9 -7.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-176   CYS-177  6.5 6.3 2.1 -7.1 113.5 113.3 90.4
 CYS-177   GLY-178  3.7 3.5 -11.4 1.4 4.8 3.6 215.6
 GLY-178   GLY-179  3.2 3.2 0.1 -3.7 104.2 100.8 0.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-180   GLY-181  8.4 8.8 -6.0 2.0 128.9 127.7 10.2
 GLY-181   SER-182  10.2 10.6 -8.2 5.5 105.0 108.0 16.6
 SER-182   GLY-183  8.2 8.5 13.2 -15.8 117.0 117.8 40.9
 GLY-183   LYS-184  11.2 11.6 19.9 -22.4 156.9 151.7 60.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-314   HIS-315  8.3 8.2 5.3 -3.3 128.1 126.2 49.0
 HIS-315   ILE-316  5.9 5.8 12.1 -12.4 146.0 142.6 -20.5
 ILE-316   ASN-317  6.5 6.3 2.0 -7.4 136.1 136.9 170.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-319   LYS-320  8.1 8.1 -9.6 2.8 47.6 45.5 129.6
 LYS-320   GLN-321  9.9 9.8 -2.1 -1.1 85.7 82.3 0.8
 GLN-321   CYS-322  10.4 10.4 -9.0 11.9 50.5 52.9 -18.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees