Ovotransferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-81   TYR-82  7.9 7.5 -6.1 7.6 102.8 107.1 -3.6
 TYR-82   GLU-83  5.7 5.8 4.9 -2.3 35.5 39.1 4.1
 GLU-83   HIS-84  4.4 4.3 -169.9 60.7 76.9 75.5 38.7
 HIS-84   THR-85  1.0 3.3 -161.0 -68.0 154.2 68.8 116.0
 THR-85   GLU-86  3.0 0.3 53.2 150.9 56.6 51.2 -197.5
 GLU-86   GLY-87  3.1 2.0 -6.4 -15.6 79.4 82.0 -1.3
 GLY-87   SER-88  2.9 5.5 110.1 56.3 137.3 146.3 -283.2
 SER-88   THR-89  3.8 5.8 -6.4 58.0 38.5 46.9 635.7
 THR-89   THR-90  4.2 6.6 -100.6 -21.6 43.5 43.3 -466.3
 THR-90   SER-91  6.0 3.2 98.3 59.9 144.2 83.9 199.8
 SER-91   TYR-92  2.8 2.7 148.9 -28.2 75.4 85.0 76.9
 TYR-92   TYR-93  2.1 2.3 0.4 -4.7 125.4 122.4 0.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-245   ARG-246  5.5 6.2 -6.5 15.9 42.1 35.9 -18.1
 ARG-246   VAL-247  3.1 4.4 6.6 18.6 55.0 63.6 37.1
 VAL-247   ALA-248  1.1 1.5 -33.7 -5.2 54.7 45.4 58.1
 ALA-248   ALA-249  4.5 4.6 17.3 -9.0 99.5 105.1 0.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees