Protein Translocase Subunit Seca

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-230   ARG-231  3.4 2.8 -3.7 7.3 25.1 26.0 -29.0
 ARG-231   ASP-232  4.1 3.9 -2.8 -8.6 68.1 68.1 68.7
 ASP-232   ASN-233  1.3 1.2 0.9 9.5 71.2 73.2 -8.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-239   ASP-240  5.9 6.0 -10.5 6.6 91.6 88.4 -5.6
 ASP-240   LYS-241  2.3 2.6 -0.7 4.5 33.1 35.2 12.1
 LYS-241   VAL-242  2.4 2.8 -0.9 -6.7 106.0 107.8 -3.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-266   ILE-267  9.2 8.3 -5.9 0.8 65.9 67.1 74.5
 ILE-267   ILE-268  10.5 9.8 16.8 -16.6 167.1 166.1 -4.0
 ILE-268   SER-269  10.6 10.4 -32.4 41.3 82.2 89.9 -57.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-398   THR-399  8.5 7.7 -9.8 4.3 45.2 45.2 26.3
 THR-399   ILE-400  7.3 6.6 4.7 -16.5 111.9 112.3 20.9
 ILE-400   THR-401  4.4 3.7 0.6 -13.5 124.3 117.8 17.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-639   THR-640  5.5 5.2 -7.7 9.9 96.0 94.9 17.8
 THR-640   LEU-641  5.0 4.5 -9.6 11.9 30.9 27.3 -6.0
 LEU-641   MET-642  6.9 6.2 -1.0 -2.1 46.5 53.0 21.4
 MET-642   GLU-643  4.0 3.3 -7.8 8.7 83.1 84.7 22.3
 MET-642   GLU-643  4.0 3.3 -7.8 8.7 83.1 84.7 22.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-642   GLU-643  4.0 3.3 -7.8 8.7 83.1 84.7 22.3
 MET-642   GLU-643  4.0 3.3 -7.8 8.7 83.1 84.7 22.3
 GLU-643   MET-644  2.2 1.5 -7.1 4.1 115.6 118.0 -14.5
 MET-644   ASP-645  5.8 5.0 -2.0 6.7 173.2 173.4 25.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-649   LYS-650  4.4 4.4 -7.7 12.4 79.8 80.3 8.8
 LYS-650   GLN-651  7.1 7.5 -9.1 3.8 58.2 54.2 38.3
 GLN-651   ARG-652  9.5 9.7 -12.1 12.5 18.8 19.9 6.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-785   PRO-786  7.6 6.7 -25.7 22.9 150.7 153.0 -9.9
 PRO-786   ILE-787  9.2 8.3 -12.3 -1.4 136.6 137.9 -115.8
 ILE-787   VAL-788  7.1 7.0 7.1 -1.3 88.2 92.6 6.5
 VAL-788   GLU-789  9.7 9.8 2.5 8.9 69.4 73.8 45.8
 GLU-789   PHE-790  12.5 12.4 -10.1 0.2 168.7 177.5 -59.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees