Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-86   PRO-87  3.3 2.9 21.3 -5.0 81.4 95.9 -8.3
 PRO-87   GLU-88  2.5 2.9 -81.7 51.7 44.1 51.9 90.0
 GLU-88   ILE-89  5.9 6.1 9.1 -18.4 87.4 77.6 -19.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-177   ASN-178  10.8 11.2 -18.5 5.7 108.5 106.5 3.1
 ASN-178   LEU-179  8.3 8.7 -21.3 12.0 111.1 107.5 -10.0
 LEU-179   PRO-180  9.2 9.7 -3.2 15.1 134.2 125.5 -28.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-181   CYS-182  10.3 9.4 -47.2 47.8 148.0 147.1 -34.6
 CYS-182   ASP-183  10.7 10.8 -6.3 2.2 122.8 128.8 -8.8
 ASP-183   VAL-184  10.2 10.2 -15.5 18.8 154.2 155.4 2.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-188   VAL-189  4.8 4.3 -9.3 -1.0 64.9 57.8 37.6
 VAL-189   SER-190  2.9 2.8 -19.8 -5.5 57.1 49.8 63.4
 SER-190   ALA-191  0.7 1.0 3.8 -2.4 160.9 152.6 -35.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees