Trna Pseudouridine Synthase D

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-29   VAL-30  2.7 2.7 -5.8 15.1 109.5 106.3 27.6
 VAL-30   GLU-31  2.9 4.0 4.5 -11.4 6.5 11.9 -45.3
 GLU-31   ASP-32  1.8 2.9 7.5 -8.4 58.4 54.3 34.4
 ASP-32   LEU-33  4.2 5.0 17.7 -9.0 32.5 31.9 51.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-78   LYS-79  8.6 10.1 29.4 -61.3 49.0 52.2 -10.6
 LYS-79   ASP-80  6.3 8.2 -12.5 -33.1 138.8 156.5 -192.2
 ASP-80   LYS-81  8.2 9.8 38.3 -0.5 42.7 41.4 215.1
 LYS-81   HIS-82  9.1 8.7 41.5 -9.2 31.7 67.1 88.8
 HIS-82   ALA-83  8.6 8.0 -69.9 47.5 84.4 82.4 38.1
 ALA-83   VAL-84  5.0 4.7 -8.0 7.6 83.9 93.3 5.9
 VAL-84   THR-85  1.6 1.2 13.8 2.5 163.0 161.2 -67.3
 THR-85   GLU-86  1.8 1.8 -18.9 31.0 72.2 84.4 37.4
 GLU-86   GLN-87  3.7 4.6 -31.3 49.1 14.7 24.0 -102.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-124   ALA-125  5.7 5.8 9.5 0.5 118.6 115.8 -37.3
 ALA-125   LEU-126  3.5 3.6 -70.4 90.0 129.9 119.1 81.8
 LEU-126   LYS-127  0.9 1.2 -15.8 13.5 78.7 58.9 -8.7
 LYS-127   GLY-128  3.3 3.1 0.8 6.2 52.6 54.7 26.2
 GLY-128   ASN-129  4.0 4.0 2.0 -4.8 20.5 20.9 -7.3
 ASN-129   ALA-130  4.1 4.3 -10.4 2.9 120.4 116.3 -23.9
 ALA-130   PHE-131  6.4 7.0 -0.4 6.4 146.8 151.9 47.7
 PHE-131   THR-132  7.2 7.4 -6.4 9.7 134.5 137.0 -31.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees