Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-147   SER-148  9.0 9.0 2.5 -1.6 35.2 33.3 106.0
 SER-148   CYS-149  8.2 8.2 0.9 0.2 88.3 88.5 -15.0
 CYS-149   THR-150  5.9 5.9 -9.7 6.9 45.5 46.0 148.1
 THR-150   THR-151  8.2 8.3 10.1 -6.1 154.2 156.5 -65.1
 THR-151   ASN-152  7.1 7.1 -1.3 -0.9 87.6 85.3 -147.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-315   GLY-316  1.9 1.7 11.9 -10.6 21.5 19.9 121.5
 GLY-316   TYR-317  2.1 2.0 10.1 -5.6 77.6 74.7 54.1
 TYR-317   SER-318  1.7 1.8 0.0 -1.7 118.1 116.6 30.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees