Virb11 Homolog

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-133   ILE-134  14.3 14.2 36.5 -10.8 114.8 132.1 -196.1
 ILE-134   PRO-135  14.1 13.6 3.7 9.6 104.7 119.4 -72.9
 PRO-135   SER-136  11.2 11.1 -4.4 35.1 102.9 93.0 37.4
 SER-136   LYS-137  10.1 9.1 -32.6 25.6 18.6 49.8 128.5
 LYS-137   THR-138  11.8 12.2 -35.3 9.2 90.0 84.9 81.6
 THR-138   THR-139  11.8 12.0 32.9 -32.7 99.7 110.1 107.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-315   ILE-316  7.9 7.7 9.7 -10.7 120.8 118.6 -28.2
 ILE-316   ASN-317  5.1 4.9 -6.6 4.9 27.8 30.1 53.8
 ASN-317   HIS-318  4.5 4.1 2.9 -7.1 99.7 95.2 4.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-319   LYS-320  4.3 4.3 -8.1 4.6 24.5 26.4 28.0
 LYS-320   GLN-321  4.5 4.6 11.3 -6.2 98.1 98.4 0.3
 GLN-321   CYS-322  7.3 7.2 2.2 2.7 103.1 104.7 41.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees