Succinate Dehydrogenase Ip Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-21   ASP-22  27.7 24.7 -13.6 15.8 131.7 70.4 6.8
 ASP-22   LYS-23  28.2 21.7 -32.3 71.0 66.6 109.3 3.8
 LYS-23   PRO-24  29.6 20.8 -101.1 -23.1 35.1 165.8 72.2
 PRO-24   GLY-25  31.3 21.1 3.1 -8.8 143.9 80.4 8.4
 GLY-25   ASP-26  33.3 19.2 0.1 5.8 134.3 101.9 3.7
 ASP-26   LYS-27  30.3 16.3 -164.3 -1.5 53.5 140.1 -12.1
 LYS-27   PRO-28  29.8 16.1 172.4 -13.5 98.0 43.4 -91.5
 PRO-28   ARG-29  26.4 16.2 -175.4 80.2 49.4 80.6 58.7
 ARG-29   MET-30  24.2 13.6 150.9 39.3 94.2 74.2 26.8
 MET-30   GLN-31  20.7 11.2 177.6 61.2 70.3 3.4 -79.7
 GLN-31   THR-32  18.7 12.4 -178.4 25.9 70.4 116.0 -1.6
 THR-32   TYR-33  16.0 11.9 -178.8 73.2 133.5 80.9 62.6
 TYR-33   GLU-34  13.3 8.5 174.1 37.7 121.7 51.6 9.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-56   SER-57  14.6 14.5 -150.1 7.4 55.9 91.2 -83.5
 SER-57   THR-58  13.7 12.2 -30.4 20.0 88.4 103.6 -0.6
 THR-58   LEU-59  17.0 15.5 -27.8 -1.8 134.1 32.0 2.2
 LEU-59   THR-60  15.7 17.1 -173.7 67.9 63.9 54.0 83.0
 THR-60   PHE-61  16.4 14.3 -179.1 95.0 125.8 105.6 -29.1
 PHE-61   ARG-62  15.9 15.3 152.2 34.3 127.6 103.8 -78.4
 ARG-62   ARG-63  16.4 19.0 173.8 107.9 72.3 166.4 44.2
 ARG-63   SER-64  14.0 18.5 179.6 80.8 146.1 106.7 78.5
 SER-64   CYS-65  14.0 17.7 52.7 127.8 80.2 83.7 -62.7
 CYS-65   ARG-66  14.1 21.4 72.7 -128.8 55.2 69.4 -45.4
 ARG-66   GLU-67  11.5 20.9 156.6 67.2 53.8 64.5 111.1
 GLU-67   GLY-68  14.2 24.1 106.6 -126.3 55.3 21.6 -18.4
 GLY-68   ILE-69  16.2 25.3 -59.6 51.3 72.5 134.9 2.1
 ILE-69   CYS-70  19.2 26.1 -21.0 19.0 57.8 103.0 7.8
 CYS-70   GLY-71  19.4 22.6 -13.3 -157.8 118.3 121.6 -164.7
 GLY-71   SER-72  20.0 21.2 -29.6 -5.0 78.6 162.3 -3.4
 SER-72   CYS-73  18.3 23.5 5.2 24.5 51.6 59.5 22.1
 CYS-73   ALA-74  15.9 22.4 -65.7 -5.9 157.9 106.3 -53.8
 ALA-74   MET-75  18.2 18.7 -170.9 99.7 105.3 140.0 240.4
 MET-75   ASN-76  17.9 19.4 143.3 41.1 8.0 31.2 -144.4
 ASN-76   ILE-77  17.7 20.9 -163.2 59.6 104.1 106.8 -29.3
 ILE-77   ALA-78  14.2 18.1 -155.3 -130.6 171.8 110.6 53.8
 ALA-78   GLY-79  13.6 15.5 -85.2 -166.9 118.1 158.2 75.0
 GLY-79   GLY-80  17.2 17.3 -7.4 66.9 74.8 134.2 -161.6
 GLY-80   ASN-81  17.6 18.3 154.3 18.7 169.5 47.7 49.5
 ASN-81   THR-82  19.0 15.1 -169.5 93.4 76.7 126.7 40.6
 THR-82   LEU-83  17.0 14.3 150.1 18.5 161.0 47.8 -100.3
 LEU-83   ALA-84  15.4 17.8 -169.1 1.8 93.6 138.1 51.6
 ALA-84   CYS-85  12.0 17.5 -23.7 13.9 72.2 132.8 1.3
 CYS-85   THR-86  11.0 14.0 -23.8 56.2 127.0 126.8 19.3
 THR-86   LYS-87  11.9 15.3 -57.9 27.7 155.0 139.2 -24.8
 LYS-87   LYS-88  10.4 18.2 -152.6 -10.3 97.5 132.5 -39.5
 LYS-88   ILE-89  7.1 16.6 -169.1 6.6 105.7 121.9 149.8
 ILE-89   ASP-90  4.8 13.5 174.5 19.7 19.6 38.5 -131.1
 ASP-90   PRO-91  4.2 16.0 -148.4 10.0 89.9 135.5 -30.0
 PRO-91   ASP-92  1.1 17.1 -48.6 14.5 138.1 123.3 175.2
 ASP-92   LEU-93  3.4 13.5 -147.6 3.3 64.4 129.0 -5.8
 LEU-93   SER-94  6.6 13.0 -23.0 18.4 121.6 143.7 -8.2
 SER-94   LYS-95  8.7 15.9 -21.3 35.8 82.8 128.9 -1.7
 LYS-95   THR-96  8.8 14.4 -176.0 32.8 16.9 118.7 -128.1
 THR-96   THR-97  11.0 11.1 -146.6 0.3 80.1 137.5 51.6
 THR-97   LYS-98  10.8 13.3 -121.4 175.5 58.8 135.5 19.1
 LYS-98   ILE-99  14.4 14.1 -108.5 8.9 54.3 89.8 27.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees