Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-123   GLU-124  9.5 9.7 8.6 -0.9 74.2 74.2 -13.4
 GLU-124   ARG-125  8.9 8.7 -18.8 17.0 84.5 77.8 -26.9
 ARG-125   VAL-126  5.1 4.9 0.5 -7.0 156.1 155.8 25.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-145   PRO-146  11.5 11.6 -6.2 -14.5 107.5 93.6 -41.8
 PRO-146   GLU-147  14.2 14.4 26.9 4.4 133.7 131.3 -147.9
 GLU-147   ASN-148  16.9 17.5 -90.9 -156.7 94.1 108.2 283.7
 ASN-148   GLU-149  19.5 19.5 89.3 62.4 56.7 46.2 859.2
 GLU-149   GLU-150  21.1 18.2 -49.9 134.7 148.4 162.3 -1525.5
 GLU-150   ILE-151  21.9 17.2 11.2 -64.4 67.9 75.3 -65.8
 ILE-151   ALA-152  18.2 18.2 169.9 -15.3 86.9 113.7 1022.8
 ALA-152   SER-153  17.6 16.5 160.1 19.1 31.3 129.4 29.9
 SER-153   ARG-154  19.6 17.8 -21.4 42.6 144.3 108.2 121.2
 LEU-155   THR-156  13.8 13.8 -1.6 -9.0 134.1 124.4 -29.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees