Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  3.5 3.5 -7.4 7.5 148.2 147.0 -5.3
 LEU-108   GLY-109  0.9 0.5 9.2 -27.3 109.0 106.3 36.0
 GLY-109   ILE-110  3.4 3.3 -0.7 17.3 140.6 144.9 55.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-191   THR-192  1.4 1.4 -11.8 19.7 66.3 66.4 -12.7
 THR-192   SER-193  2.7 2.6 -3.5 -4.1 29.8 23.0 24.7
 SER-193   ILE-194  4.1 3.7 -3.0 3.8 45.9 48.9 26.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-195   TYR-196  2.3 2.4 49.7 -36.8 45.8 62.7 38.4
 TYR-196   VAL-197  4.3 3.8 -0.4 3.3 153.4 160.7 16.0
 VAL-197   THR-198  2.7 2.2 14.4 7.2 58.3 64.2 100.5
 THR-198   GLN-199  1.3 2.3 -15.0 -13.2 68.1 64.5 47.2
 THR-198   GLN-199  1.3 2.3 -15.0 -13.2 68.1 64.5 47.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-198   GLN-199  1.3 2.3 -15.0 -13.2 68.1 64.5 47.2
 THR-198   GLN-199  1.3 2.3 -15.0 -13.2 68.1 64.5 47.2
 GLN-199   ARG-200  4.5 5.1 44.2 -28.9 146.0 125.9 -66.0
 ARG-200   ASN-201  4.0 4.3 -172.3 30.9 49.6 33.3 551.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-202   ASN-203  2.8 2.3 57.2 -22.4 81.7 79.3 -11.0
 ASN-203   LEU-204  4.6 3.9 9.8 -16.4 147.0 145.6 53.4
 LEU-204   THR-205  4.7 4.5 7.3 1.4 134.8 130.2 -16.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  9.3 9.3 10.5 -5.3 20.1 21.2 36.6
 ASP-212   SER-213  7.0 7.0 4.3 3.8 89.5 87.1 -1.8
 SER-213   LYS-214  3.5 3.5 -11.3 33.6 119.8 111.5 82.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees