Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-206   GLU-207  3.6 3.6 -3.1 -0.2 133.5 132.3 -17.4
 GLU-207   LEU-208  4.8 4.2 10.7 -6.7 17.9 14.2 27.0
 LEU-208   PHE-209  5.2 5.1 12.2 -12.9 72.1 64.1 5.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-226   PHE-227  4.7 4.4 0.4 -3.3 148.1 162.3 20.0
 PHE-227   GLU-228  2.7 3.0 -20.7 32.7 62.5 65.2 -47.6
 GLU-228   LEU-229  1.7 1.6 -28.6 37.7 69.3 77.1 -10.2
 LEU-229   ALA-230  5.1 5.1 -3.4 -29.5 34.7 31.9 164.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-260   TYR-261  8.8 8.7 -0.8 7.0 48.4 52.0 -25.2
 TYR-261   ARG-262  8.7 8.7 20.5 -19.0 125.1 125.2 -20.8
 ARG-262   LEU-263  5.8 6.0 -4.4 -17.6 34.8 35.5 155.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-264   GLY-265  8.7 9.0 -6.5 -4.2 58.7 47.3 64.4
 GLY-265   ARG-266  9.4 9.4 -27.6 33.0 66.2 63.3 25.9
 ARG-266   LYS-267  12.7 12.9 32.1 -30.0 144.0 166.7 -9.4
 LYS-267   GLU-268  11.8 11.8 6.6 2.3 133.2 123.7 -7.1
 GLU-268   ILE-269  10.7 11.2 -61.3 51.1 57.3 52.7 90.2
 ILE-269   GLU-270  7.4 7.8 -6.4 8.7 33.5 44.3 -21.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees