Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-107   SER-108  5.5 5.8 0.4 1.4 73.6 74.8 13.3
 SER-108   LEU-109  2.3 2.7 -0.2 -4.0 34.9 32.6 22.9
 LEU-109   GLY-110  3.9 4.1 -1.7 18.4 107.7 110.7 49.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  12.0 12.4 -0.9 -1.3 26.7 21.7 11.2
 ASP-216   SER-217  10.1 10.3 -5.8 -0.5 87.5 88.7 9.2
 SER-217   LYS-218  6.7 6.8 -7.5 -9.1 70.0 58.5 94.4
 LYS-218   GLY-219  6.5 6.1 20.3 -16.2 74.7 68.1 4.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees