DNA Damage-Binding Protein 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-392   GLY-393  1.3 1.1 -38.4 -91.2 13.9 27.6 91.2
 GLY-393   ILE-394  0.9 0.7 -12.5 34.9 57.3 39.1 -9.0
 ILE-394   GLY-395  1.4 1.1 11.7 -41.8 121.8 107.1 9.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-702   THR-703  6.8 7.0 14.1 6.6 104.8 97.3 -0.3
 THR-703   ILE-704  5.5 6.1 25.1 -56.8 163.7 143.7 17.3
 ILE-704   ASP-705  4.2 4.8 41.3 -47.1 129.2 131.6 -3.7
 ASP-705   GLU-706  6.3 6.5 165.6 -70.9 122.2 107.1 164.5
 GLU-706   ILE-707  8.0 7.1 -133.0 -31.6 19.5 104.1 -105.9
 ILE-707   GLN-708  7.6 9.0 -150.7 -51.6 80.6 49.6 -80.4
 GLN-708   LYS-709  4.2 7.9 73.5 48.8 131.3 108.6 134.1
 LYS-709   LEU-710  4.5 4.9 141.6 -11.5 107.2 100.7 -24.7
 LEU-710   HIS-711  3.7 4.8 10.6 -13.3 58.1 51.7 -1.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees