Polymerase (Dna Directed) Kappa

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-36   ASN-37  11.3 11.8 8.2 1.9 72.1 65.2 29.3
 ASN-37   LYS-38  11.0 11.7 -26.4 27.0 170.2 177.2 2.5
 LYS-38   ILE-39  11.7 12.7 -1.2 -4.0 117.0 114.8 -17.9
 ILE-39   ILE-40  9.3 10.2 -3.8 6.3 84.3 87.9 2.8
 ILE-40   MET-41  6.6 7.5 14.7 -3.8 50.6 44.5 61.5
 MET-41   GLU-42  8.5 9.3 -6.0 1.1 163.9 155.6 -35.9
 GLU-42   ALA-43  8.1 8.5 14.0 -2.8 76.0 84.6 -5.0
 ALA-43   THR-44  4.5 4.9 -51.2 41.9 80.7 91.9 -20.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-106   ASP-107  2.9 2.8 -3.6 -0.6 12.3 9.6 20.6
 ASP-107   MET-108  3.0 3.1 1.8 -9.8 109.6 103.6 87.9
 MET-108   ASP-109  6.2 6.5 -8.9 12.2 42.9 41.6 -30.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-170   PHE-171  17.4 17.1 -3.0 -8.5 28.9 38.2 50.7
 PHE-171   ASP-172  16.6 16.0 13.2 -6.4 142.2 141.8 -47.7
 ASP-172   LYS-173  19.8 19.2 -4.7 7.4 60.3 47.3 -4.9
 LYS-173   TYR-174  18.9 18.5 -17.9 18.2 55.3 55.8 19.4
 TYR-174   ARG-175  15.4 14.9 9.5 -12.0 143.6 134.7 23.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees