Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  3.9 3.4 0.0 1.1 138.3 139.4 -6.8
 LEU-109   GLY-110  1.1 0.3 9.1 19.2 64.1 63.7 50.7
 GLY-110   ILE-111  3.7 3.6 -12.9 -8.8 41.6 45.1 45.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-196   ASN-197  1.9 2.6 1.0 -6.6 54.0 48.5 -4.9
 ASN-197   GLU-198  2.9 2.4 17.8 5.7 65.7 67.2 52.7
 GLU-198   TYR-199  3.6 2.5 -15.5 4.7 129.1 142.8 -31.6
 TYR-199   ILE-200  2.6 2.3 7.8 -8.6 25.4 32.7 -4.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  7.0 7.1 -9.3 5.9 94.0 96.2 -3.7
 SER-217   LYS-218  3.5 3.6 6.3 -27.9 102.4 111.7 43.8
 LYS-218   GLY-219  1.6 1.7 15.3 10.2 76.8 61.7 28.6
 GLY-219   TYR-220  3.5 3.9 20.9 -7.2 78.0 74.5 -3.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees