D-Maltodextrin-Binding Protein 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-108   ALA-109  8.9 9.2 16.5 -26.8 135.4 132.9 26.8
 ALA-109   VAL-110  5.6 5.8 -13.1 19.7 116.7 115.2 13.2
 VAL-110   GLU-111  2.0 2.1 -16.9 23.4 65.7 63.8 14.3
 GLU-111   ALA-112  2.1 2.9 -4.4 13.0 110.5 97.8 11.8
 ALA-112   LEU-113  5.0 4.9 -19.3 7.9 50.0 53.3 24.8
 LEU-113   SER-114  8.5 8.5 -16.5 17.7 43.3 41.7 -1.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-256   PRO-257  12.4 12.5 -4.0 14.1 76.7 69.4 -4.9
 PRO-257   PHE-258  9.8 9.8 -7.3 0.1 52.6 47.9 35.5
 PHE-258   VAL-259  7.0 7.3 -22.6 20.6 129.0 122.7 0.5
 VAL-259   GLY-260  3.6 3.9 3.7 -3.8 119.8 122.5 6.9
 GLY-260   VAL-261  1.8 2.6 5.1 13.8 64.3 66.3 43.0
 VAL-261   LEU-262  3.0 3.1 -5.9 6.2 79.2 78.7 3.8
 LEU-262   SER-263  6.5 6.7 3.5 -4.6 110.4 113.5 17.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-310   LEU-311  9.0 9.3 7.8 -8.6 90.6 88.9 -7.2
 LEU-311   ALA-312  5.7 6.0 7.1 -8.5 101.7 98.7 10.2
 ALA-312   LYS-313  4.8 5.2 -9.3 -2.1 17.8 29.2 33.0
 LYS-313   ASP-314  4.3 4.7 -11.0 27.7 83.4 82.4 24.9
 ASP-314   PRO-315  0.6 1.1 11.0 1.6 60.4 68.9 36.6
 PRO-315   ARG-316  3.8 2.9 -3.7 0.9 144.4 145.4 -12.7
 ARG-316   ILE-317  3.8 3.4 -0.2 2.0 141.8 146.1 16.4
 ILE-317   ALA-318  0.9 0.6 2.4 -0.3 76.3 80.5 -7.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-327   GLU-328  5.8 4.5 -0.2 -19.3 161.6 140.7 -68.8
 GLU-328   ILE-329  5.7 4.1 20.3 -0.7 64.9 58.2 69.9
 ILE-329   MET-330  3.7 1.8 -6.5 7.4 131.1 149.3 -13.3
 MET-330   PRO-331  1.3 1.1 26.6 -5.5 22.2 36.5 29.7
 PRO-331   ASN-332  2.0 1.2 20.7 -15.4 65.2 71.2 -38.0
 GLY-327   GLU-328  9.3 9.5 -0.2 -19.3 24.6 42.5 65.9
 GLU-328   ILE-329  8.5 8.1 20.3 -0.7 102.6 108.0 -68.8
 ILE-329   MET-330  5.2 4.7 -6.5 7.4 42.8 27.3 14.9
 MET-330   PRO-331  4.1 3.9 26.6 -5.5 145.8 139.1 -21.8
 GLY-327   GLU-328  5.8 4.5 -0.2 -19.3 161.6 140.7 -68.8
 GLU-328   ILE-329  5.7 4.1 20.3 -0.7 64.9 58.2 69.9
 ILE-329   MET-330  3.7 1.8 -6.5 7.4 131.1 149.3 -13.3
 MET-330   PRO-331  1.3 1.1 26.6 -5.5 22.2 36.5 29.7
 PRO-331   ASN-332  2.0 1.2 20.7 -15.4 65.2 71.2 -38.0
 ALA-324   GLN-325  6.0 6.1 -9.2 11.5 70.5 73.5 4.3
 GLN-325   LYS-326  9.0 9.1 -9.1 14.4 65.5 66.7 12.1
 LYS-326   GLY-327  11.3 11.5 -1.1 -15.9 39.2 29.4 36.4
 GLY-327   GLU-328  9.3 9.5 -0.2 -19.3 24.6 42.5 65.9
 GLU-328   ILE-329  8.5 8.1 20.3 -0.7 102.6 108.0 -68.8
 ILE-329   MET-330  5.2 4.7 -6.5 7.4 42.8 27.3 14.9
 MET-330   PRO-331  4.1 3.9 26.6 -5.5 145.8 139.1 -21.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees