Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  7.8 7.0 14.8 -8.6 112.0 116.8 -13.5
 LEU-108   GLY-109  4.5 3.5 -9.8 22.5 136.4 135.7 20.9
 GLY-109   ILE-110  2.3 1.6 -46.0 25.3 60.6 65.7 28.5
 ILE-110   SER-111  4.1 3.7 -2.3 -3.6 60.0 66.9 20.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  12.3 12.3 27.7 -33.4 100.3 91.8 -20.5
 GLY-209   LEU-210  10.9 9.8 8.2 14.0 103.6 115.1 -28.3
 LEU-210   ILE-211  7.5 6.6 -1.6 17.0 24.5 25.6 -39.8
 ILE-211   ASP-212  6.7 6.7 -179.6 149.1 69.7 45.1 14.5
 ASP-212   SER-213  3.8 3.7 138.8 -99.8 72.7 62.3 67.8
 SER-213   LYS-214  4.5 3.2 -3.7 15.5 78.5 74.4 3.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-250   TRP-251  8.5 8.9 -8.0 -2.2 96.9 91.1 -1.6
 TRP-251   ARG-252  5.2 5.8 -2.9 60.6 33.7 33.3 -133.1
 ARG-252   GLY-253  5.6 6.8 -18.0 12.5 52.9 71.9 -13.1
 GLY-253   ASN-254  2.7 5.2 36.3 -163.8 154.1 165.5 364.9
 ASN-254   GLY-255  3.3 5.7 -49.8 141.3 72.5 85.1 -90.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees