Tarm

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-249   VAL-250  7.3 7.6 1.2 8.4 79.7 78.2 52.1
 VAL-250   ASN-251  7.5 7.8 12.5 -11.8 61.9 70.3 -7.7
 ASN-251   HIS-252  6.7 6.9 24.3 -21.5 14.6 20.0 -9.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-257   ASP-258  13.9 14.5 29.6 -28.3 85.1 88.2 -13.0
 ASP-258   THR-259  15.4 15.9 4.5 -5.0 132.0 132.3 -9.4
 THR-259   GLY-260  13.0 13.3 -11.6 4.8 109.6 116.0 -28.8
 GLY-260   ALA-261  10.2 10.8 -3.7 -6.0 71.2 72.3 68.4
 ALA-261   PHE-262  8.0 8.0 -4.7 18.0 141.0 143.3 118.2
 PHE-262   LYS-263  5.5 5.7 2.8 6.6 96.4 95.4 -40.2
 LYS-263   LYS-264  7.2 7.3 -0.6 -9.9 64.1 64.2 62.9
 LYS-264   SER-265  7.4 7.2 12.3 -10.5 59.0 62.1 -35.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-301   ILE-302  4.5 4.2 -0.5 -3.4 37.4 35.9 35.1
 ILE-302   SER-303  4.8 4.6 8.0 -3.8 100.2 96.3 1.3
 SER-303   ASN-304  2.7 3.0 -22.3 15.6 79.6 81.0 3.1
 ASN-304   PHE-305  6.0 6.5 -10.0 7.6 167.3 173.5 -28.8
 ASN-304   PHE-305  6.0 6.5 -10.0 7.6 167.3 173.5 -28.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-304   PHE-305  6.0 6.5 -10.0 7.6 167.3 173.5 -28.8
 ASN-304   PHE-305  6.0 6.5 -10.0 7.6 167.3 173.5 -28.8
 PHE-305   VAL-306  7.6 7.9 5.2 -3.2 67.1 67.7 -35.2
 VAL-306   LYS-307  7.5 8.2 7.8 8.5 37.8 38.0 156.4
 LYS-307   ILE-308  10.5 11.2 -17.2 10.7 134.7 141.9 -160.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-402   GLU-403  12.7 12.7 5.2 -12.9 45.7 43.9 -49.5
 GLU-403   GLY-404  10.4 10.4 -7.0 -0.1 83.8 86.0 -22.7
 GLY-404   GLN-405  7.1 6.9 -6.4 17.5 144.8 154.5 68.1
 GLN-405   GLY-406  6.5 7.0 -14.6 30.4 125.4 118.5 135.4
 GLY-406   LEU-407  10.0 10.6 -26.4 43.5 156.6 143.7 66.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-411   ALA-412  11.9 12.6 -13.8 9.9 55.4 50.3 59.8
 ALA-412   MET-413  14.3 14.7 0.9 -1.4 137.4 134.5 5.9
 MET-413   ILE-414  11.9 12.0 -9.7 6.4 38.8 41.3 15.1
 ILE-414   SER-415  10.5 10.6 -4.7 -4.1 49.4 46.8 135.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-428   SER-429  10.8 11.3 0.0 -20.6 111.2 114.0 -91.0
 SER-429   ASP-430  11.2 11.3 11.8 6.2 50.4 63.5 101.2
 ASP-430   PHE-431  7.9 7.6 5.5 -8.5 18.7 12.4 -7.5
 PHE-431   ILE-432  8.2 8.1 -10.6 12.0 115.6 119.4 13.1
 ILE-432   GLU-433  12.0 11.9 14.9 -8.7 81.0 80.5 -78.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-475   GLU-476  2.6 2.7 -5.8 -0.2 83.5 80.0 -15.4
 GLU-476   LYS-477  2.5 2.2 3.8 -7.2 154.1 158.8 48.0
 LYS-477   TYR-478  2.6 2.4 15.0 -29.4 109.8 115.6 -9.5
 TYR-478   SER-479  1.2 1.4 5.5 2.1 55.6 54.1 79.1
 SER-479   THR-480  3.6 3.6 20.4 -6.6 122.3 121.4 -157.2
 THR-480   GLU-481  7.0 7.3 -6.7 17.2 81.1 83.2 -59.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-482   ILE-483  7.4 7.1 3.3 -4.2 158.6 154.4 23.0
 ILE-483   LEU-484  6.8 6.9 10.9 -15.1 100.6 104.3 -30.1
 LEU-484   GLU-485  10.5 10.7 9.2 -1.3 106.4 101.4 -47.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees