Amidase Operon

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-136   ARG-137  23.0 23.5 24.5 12.6 161.9 159.7 -712.5
 ARG-137   HIS-138  24.1 24.1 -93.7 72.9 51.1 44.7 502.2
 HIS-138   TYR-139  20.9 21.1 6.5 13.4 85.1 81.0 164.3
 TYR-139   GLY-140  19.7 20.1 -149.5 138.3 104.5 105.3 -60.0
 GLY-140   GLU-141  22.6 22.6 -25.7 26.7 156.2 165.4 2.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-212   LEU-213  5.8 6.4 -6.4 7.9 98.9 94.8 -44.5
 LEU-213   TYR-214  7.1 7.2 6.3 -16.4 10.4 18.2 -182.3
 TYR-214   ARG-215  6.2 6.4 17.2 -5.9 54.2 51.4 157.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-223   GLY-224  14.9 13.8 -82.1 119.7 89.3 43.9 -177.2
 GLY-224   ARG-225  14.9 14.8 -50.7 48.3 139.1 108.8 -365.0
 ARG-225   ARG-226  15.4 14.6 -44.3 67.5 169.3 161.3 664.4
 ARG-226   PRO-227  14.7 14.3 21.6 -11.2 78.5 81.0 -259.1
 PRO-227   PRO-228  14.8 15.1 -10.5 6.5 99.7 99.7 -76.3
 PRO-228   ILE-229  12.1 12.4 -7.9 5.5 170.5 167.3 -70.3
 ILE-229   ALA-230  10.7 10.9 2.9 -18.2 84.2 86.3 -86.4
 ALA-230   SER-231  12.2 12.3 -26.0 31.1 153.3 161.7 123.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-243   SER-244  4.4 4.5 15.9 -5.7 58.5 56.3 44.5
 SER-244   ASP-245  1.7 2.1 -25.6 16.5 105.3 96.5 50.1
 ASP-245   VAL-246  4.3 4.1 -11.5 24.3 36.3 35.7 -265.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees