Peroxisome Proliferator-Activated Receptor Gamma

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-447   GLU-448  19.0 17.7 36.4 -21.5 57.7 63.2 51.9
 GLU-448   HIS-449  16.8 15.8 -1.4 16.7 69.9 43.7 -50.5
 HIS-449   VAL-450  15.8 16.1 16.3 -21.7 143.5 128.3 15.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees