Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-86   PRO-87  5.2 5.1 16.4 -11.1 83.3 88.2 10.8
 PRO-87   GLU-88  1.5 1.4 -73.7 18.3 34.8 35.3 126.1
 GLU-88   ILE-89  3.4 2.8 21.9 -19.1 86.9 80.6 -16.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-174   ARG-175  13.9 14.2 35.0 -5.9 46.0 38.9 55.7
 ARG-175   GLY-176  11.9 12.3 -10.4 3.3 78.3 79.8 -1.4
 GLY-176   VAL-177  8.1 8.6 -15.7 -0.6 126.6 122.5 -18.1
 VAL-177   ASN-178  7.0 7.3 -20.4 7.5 99.5 91.2 31.2
 ASN-178   LEU-179  4.6 4.3 -31.1 17.6 104.5 104.8 -2.8
 LEU-179   PRO-180  6.6 5.8 7.3 0.7 55.0 71.2 -27.6
 PRO-180   GLY-181  6.2 5.0 152.9 168.7 86.7 91.1 17.4
 GLY-181   CYS-182  9.8 8.3 25.2 6.2 157.4 125.6 -40.1
 CYS-182   ASP-183  10.0 9.4 -156.4 143.5 53.9 31.6 44.5
 ASP-183   VAL-184  10.2 9.0 -27.0 1.5 36.1 38.5 54.0
 VAL-184   ASP-185  7.5 6.8 -22.6 35.4 34.1 35.2 -40.8
 ASP-185   LEU-186  8.3 7.6 31.0 -34.9 141.8 133.8 13.7
 LEU-186   PRO-187  5.1 4.1 -7.0 3.1 63.8 64.5 -13.2
 PRO-187   ALA-188  5.2 4.2 -3.9 8.7 116.6 113.6 -5.2
 ALA-188   VAL-189  6.4 6.1 -15.5 -4.9 74.4 73.5 41.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees