Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-107   SER-108  8.0 8.0 5.4 -7.4 19.7 15.5 -22.7
 SER-108   LEU-109  6.2 6.3 -9.6 9.3 90.9 94.4 6.3
 LEU-109   GLY-110  3.2 3.5 -7.0 17.2 165.4 168.9 128.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-192   GLU-193  8.8 8.8 -2.5 -6.6 101.2 101.7 -63.8
 GLU-193   SER-194  5.9 6.1 -9.0 9.2 117.1 123.9 -5.8
 SER-194   THR-195  3.0 3.2 11.2 -4.4 5.7 5.9 85.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-199   ILE-200  5.3 5.6 -9.4 9.8 74.2 77.9 64.6
 ILE-200   GLU-201  9.1 9.3 -5.0 -0.7 84.9 86.1 56.5
 GLU-201   GLN-202  9.5 9.8 1.7 -2.4 156.8 154.8 -2.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  1.7 2.2 -5.0 -0.6 143.6 146.6 -56.1
 SER-217   LYS-218  4.4 4.8 2.7 -22.6 75.8 78.5 -109.9
 LYS-218   GLY-219  6.9 7.5 -5.5 20.5 145.8 167.9 205.2
 GLY-219   TYR-220  8.8 9.0 29.4 -14.0 60.9 63.9 38.9
 TYR-220   GLY-221  10.6 10.8 -6.4 12.0 102.3 104.9 2.1
 GLY-221   ILE-222  14.1 14.3 11.0 -10.2 56.8 52.1 -4.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-254   TRP-255  1.3 1.3 -7.5 6.3 129.3 127.6 -4.0
 TRP-255   TYR-256  1.8 1.8 -4.6 9.4 72.8 71.3 -32.0
 TYR-256   ASP-257  4.8 4.7 -6.8 0.5 9.6 9.9 86.9
 ASP-257   LYS-258  4.7 4.6 -2.3 1.8 68.9 67.6 -13.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees