Ns3 Helicase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-210   VAL-211  19.2 20.1 0.7 3.6 148.2 149.3 -59.5
 VAL-211   ALA-212  16.8 17.6 -6.1 2.6 44.6 46.8 33.3
 ALA-212   ALA-213  19.8 20.5 -7.6 4.9 56.4 61.5 17.0
 ALA-213   GLU-214  21.3 22.5 3.6 -7.5 133.6 134.3 48.2
 GLU-214   MET-215  18.2 19.7 1.3 2.7 143.5 145.1 -52.8
 MET-215   GLU-216  18.1 19.2 -4.0 -14.7 53.5 56.3 171.2
 GLU-216   GLU-217  21.7 22.9 13.8 -3.8 131.0 118.6 -106.0
 GLU-217   ALA-218  20.7 22.9 2.9 -3.0 138.5 144.0 -12.0
 ALA-218   LEU-219  17.6 19.8 -18.3 14.5 49.4 44.8 44.1
 LEU-219   ARG-220  19.8 21.1 1.6 -3.8 112.3 106.6 -14.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-309   PRO-310  5.9 6.2 -2.5 -4.2 13.6 11.8 41.4
 PRO-310   ASP-311  4.5 4.9 -7.2 7.8 55.5 53.1 25.3
 ASP-311   SER-312  4.4 5.0 -10.9 8.8 97.9 93.2 -4.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-408   SER-409  5.6 5.7 -20.4 -8.9 37.2 45.4 236.4
 SER-409   ARG-410  4.2 4.6 28.6 -3.8 79.5 85.0 -82.4
 ARG-410   ARG-411  1.2 1.2 6.3 8.3 135.4 135.9 -123.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-428   MET-429  3.7 3.8 -1.5 10.2 77.4 77.3 -24.0
 MET-429   PRO-430  4.7 4.7 -4.8 -5.0 14.7 26.4 137.2
 PRO-430   VAL-431  4.7 4.2 -0.6 9.7 46.2 44.8 -74.2
 VAL-431   THR-432  4.5 4.3 -2.2 8.1 51.5 57.1 5.3
 THR-432   HIS-433  6.7 6.7 -5.0 -3.7 43.3 47.2 62.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-454   LEU-455  9.2 9.3 -9.5 9.9 37.4 32.3 -9.2
 LEU-455   TYR-456  10.1 10.2 0.6 -9.9 124.7 124.8 10.8
 TYR-456   GLY-457  7.3 7.6 14.3 -44.1 149.5 144.2 416.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees