Retinoid X Receptor-Alpha

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-316   SER-317  7.3 7.2 2.4 -6.2 94.5 89.2 2.3
 SER-317   ILE-318  4.9 4.7 13.7 -12.8 42.6 41.8 -22.3
 ILE-318   ALA-319  2.4 2.5 20.6 -32.2 53.8 53.5 5.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-333   ARG-334  10.9 10.6 16.4 13.3 43.4 34.6 104.2
 ARG-334   ASN-335  9.3 10.3 -15.3 19.0 129.6 138.1 50.7
 ASN-335   SER-336  12.7 13.5 -20.0 20.8 142.3 127.8 -32.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-343   ALA-344  7.4 8.1 30.9 -14.1 70.7 77.4 60.1
 ALA-344   ILE-345  6.4 7.3 18.5 -20.0 65.7 69.4 3.3
 ILE-345   PHE-346  2.7 3.6 10.6 -7.7 28.8 25.9 4.1
 PHE-346   ASP-347  3.3 4.2 11.4 -0.5 137.0 133.0 -67.8
 PHE-346   ASP-347  3.3 4.2 11.4 -0.5 137.0 133.0 -67.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-346   ASP-347  3.3 4.2 11.4 -0.5 137.0 133.0 -67.8
 PHE-346   ASP-347  3.3 4.2 11.4 -0.5 137.0 133.0 -67.8
 ASP-347   ARG-348  5.2 6.4 -3.9 -7.7 82.4 77.3 25.4
 ARG-348   VAL-349  4.8 5.3 4.1 -3.8 133.8 129.9 19.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-431   CYS-432  4.5 4.0 -29.0 16.4 96.0 93.1 18.8
 CYS-432   LEU-433  3.5 3.3 25.0 -21.5 143.7 138.3 -12.8
 LEU-433   GLU-434  6.2 6.0 -7.3 5.6 32.4 29.3 18.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees