Nickel-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-125   TYR-126  10.6 10.9 35.8 -63.3 163.5 165.6 111.7
 TYR-126   TYR-127  9.0 8.9 -26.9 0.5 69.8 86.0 5.2
 TYR-127   PRO-128  7.5 6.6 10.7 5.5 120.0 136.4 -21.9
 PRO-128   PHE-129  4.9 4.8 -17.5 10.8 123.9 105.7 -73.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-218   GLY-219  15.8 16.3 42.9 -10.9 85.6 83.9 54.9
 GLY-219   ASN-220  13.2 13.6 29.4 49.2 142.0 117.6 -228.1
 ASN-220   GLU-221  10.4 10.8 166.5 52.4 104.4 153.5 412.3
 GLU-221   GLY-222  12.1 10.9 -78.3 -153.5 46.5 87.2 -188.0
 GLY-222   LEU-223  14.0 14.1 -48.1 -43.2 101.0 94.7 -55.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-246   GLU-247  2.6 2.3 -62.6 58.5 93.4 84.6 -33.6
 GLU-247   THR-248  1.4 2.0 -9.6 0.0 29.7 41.0 -5.1
 THR-248   VAL-249  3.6 3.6 -9.1 8.0 68.0 65.3 2.2
 VAL-249   MET-250  5.7 5.5 -1.2 -3.0 61.0 66.0 36.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-469   ILE-470  1.1 1.4 5.8 18.5 78.4 81.4 32.8
 ILE-470   SER-471  2.8 2.7 -15.5 -13.7 43.7 57.5 59.7
 SER-471   MET-472  5.8 5.8 -14.7 -5.6 71.6 86.0 -11.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees