Multidrug Efflux Pump Subunit Acra

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-90   VAL-91  9.4 8.4 -34.6 36.3 65.3 79.5 7.1
 VAL-91   SER-92  7.7 7.6 24.9 27.0 72.4 83.1 40.2
 SER-92   LEU-93  3.9 4.3 36.0 -13.7 91.9 37.7 66.9
 LEU-93   TYR-94  4.0 2.9 -55.4 -17.0 105.8 82.1 9.3
 TYR-94   GLN-95  1.7 3.5 60.5 -31.2 145.6 166.6 -96.0
 GLN-95   ILE-96  2.8 4.6 -5.2 7.6 97.5 86.6 -3.6
 ILE-96   ASP-97  6.1 7.3 -15.0 5.9 23.8 22.5 34.3
 ASP-97   PRO-98  8.6 9.6 -0.7 -17.1 56.7 48.5 13.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-171   ALA-172  8.0 7.5 61.3 -8.3 109.3 100.7 -53.3
 ALA-172   TYR-173  6.0 6.7 -19.1 -49.6 18.8 7.3 244.9
 TYR-173   THR-174  7.6 7.1 27.3 11.0 125.7 105.1 -87.5
 THR-174   LYS-175  4.5 6.1 -153.6 65.2 93.4 75.7 -384.3
 LYS-175   VAL-176  3.7 2.3 -153.4 -57.2 67.1 31.5 470.9
 VAL-176   THR-177  4.6 1.6 -36.1 -7.6 130.5 81.9 -210.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees