Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-280   ARG-281  28.3 28.3 0.1 0.8 101.3 101.0 -17.1
 ARG-281   LEU-282  27.0 27.0 2.0 -2.4 29.6 29.7 7.7
 ASN-300   VAL-301  26.5 26.6 2.9 -1.5 104.4 105.1 -6.8
 VAL-301   ARG-302  23.2 23.3 -1.7 1.3 133.3 134.2 10.9
 ARG-302   GLU-303  21.5 21.6 -0.6 -0.3 148.8 148.2 -19.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-310   LEU-311  15.8 16.0 7.0 -4.9 112.5 112.5 -74.6
 LEU-311   GLU-312  15.9 15.9 -9.8 5.4 90.7 88.2 -83.4
 GLU-312   PHE-313  12.2 12.2 -18.8 13.6 28.4 27.8 162.2
 PHE-313   GLU-314  11.5 11.5 -4.3 0.0 50.3 49.4 74.6
 GLU-314   ASP-315  11.0 11.1 1.2 0.3 153.0 152.0 -51.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-392   HIS-393  5.4 5.3 0.4 3.1 30.0 28.1 94.4
 HIS-393   VAL-394  4.0 4.1 0.6 1.9 97.8 95.1 -59.4
 VAL-394   ASN-395  2.1 2.0 -4.2 3.9 61.4 64.0 3.3
 ASN-395   LEU-396  1.9 1.9 0.8 -4.3 153.8 152.0 86.8
 LEU-396   THR-397  3.9 3.9 -2.4 -0.5 69.3 69.0 -41.8
 THR-397   MET-398  4.8 4.7 -4.6 5.0 49.0 45.7 5.4
 MET-398   LEU-399  7.9 7.8 -1.6 9.6 64.1 62.6 -99.2
 LEU-399   GLY-400  9.5 9.4 -4.7 -16.3 27.4 32.7 421.1
 VAL-420   LYS-421  19.3 19.1 12.3 -8.0 26.0 28.9 53.6
 LYS-421   GLY-422  20.1 19.9 3.4 -2.2 48.9 48.5 -28.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-436   VAL-437  3.5 3.5 -3.9 2.0 66.3 64.5 17.5
 VAL-437   VAL-438  3.1 3.1 -4.2 2.0 64.1 62.7 42.8
 VAL-438   VAL-439  6.8 6.7 3.3 -7.3 119.7 120.3 38.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-470   THR-471  13.1 13.1 7.8 -13.9 55.8 55.0 -84.8
 THR-471   GLU-472  15.6 15.6 -11.4 13.7 81.3 86.7 49.0
 GLU-472   LYS-473  19.3 19.3 4.1 1.0 72.6 70.6 102.4
 LYS-473   ALA-474  19.7 19.5 -13.8 -0.3 71.2 66.2 132.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees