Hypothetical Transcriptional Regulator In Qaca 5'Region

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-67   GLU-68  5.3 4.3 11.6 5.2 67.4 74.2 28.3
 GLU-68   GLN-69  5.3 4.2 10.2 -14.0 64.1 59.9 -5.1
 GLN-69   ILE-70  2.7 1.8 -12.9 37.4 163.1 167.9 71.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-87   THR-88  12.2 11.8 -74.9 61.7 71.1 85.7 -12.9
 THR-88   THR-89  13.2 12.8 -32.2 -2.0 107.2 121.2 -63.0
 THR-89   GLU-90  10.6 10.4 -139.8 2.1 156.2 173.4 -368.5
 GLU-90   TYR-91  11.7 10.6 -46.3 60.8 117.5 113.1 11.6
 TYR-91   TYR-92  8.3 14.3 164.1 -158.6 63.5 76.3 42.7
 TYR-92   TYR-93  5.8 14.5 116.3 -80.6 74.0 79.5 80.1
 TYR-93   PRO-94  7.6 11.5 142.9 12.8 52.0 7.6 397.7
 PRO-94   LEU-95  10.5 12.7 -57.3 85.9 166.9 132.6 70.8
 LEU-95   GLN-96  8.7 9.6 -71.7 32.4 111.4 108.6 -56.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-115   MET-116  7.1 8.6 16.6 1.7 67.8 56.1 31.0
 MET-116   ASN-117  4.1 5.6 1.8 -4.6 48.9 39.9 -6.9
 ASN-117   LYS-118  7.0 8.4 1.1 4.6 25.9 43.8 15.1
 LYS-118   LEU-119  7.7 9.8 17.2 -28.0 55.7 48.7 -11.6
 LEU-119   GLU-120  4.1 6.3 3.4 9.0 64.9 60.4 19.4
 GLU-120   ASN-121  4.9 6.2 22.5 -23.8 43.2 38.1 5.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees