Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-148   CYS-149  13.8 13.7 -8.4 11.3 112.4 107.2 124.5
 CYS-149   THR-150  10.6 10.4 -0.5 0.0 47.7 44.7 35.9
 THR-150   THR-151  8.7 8.7 -12.7 9.4 42.6 43.0 60.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-153   LEU-154  5.8 5.9 -3.6 7.7 160.9 161.2 204.1
 LEU-154   ALA-155  5.4 5.5 -8.6 6.3 125.0 123.2 -130.3
 ALA-155   PRO-156  8.2 8.4 0.5 -1.5 92.5 91.7 45.8
 PRO-156   LEU-157  8.5 8.7 -6.2 6.1 63.2 63.1 -5.7
 PRO-156   LEU-157  8.5 8.7 -6.2 6.1 63.2 63.1 -5.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-156   LEU-157  8.5 8.7 -6.2 6.1 63.2 63.1 -5.7
 PRO-156   LEU-157  8.5 8.7 -6.2 6.1 63.2 63.1 -5.7
 LEU-157   ALA-158  5.5 5.6 3.6 -3.9 175.7 172.7 68.7
 ALA-158   LYS-159  5.1 5.4 2.0 -7.4 115.0 117.9 -44.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-169   GLY-170  3.7 3.7 -3.2 -7.1 27.8 31.0 322.6
 GLY-170   LEU-171  4.3 4.3 7.2 -3.5 113.5 114.9 -101.6
 LEU-171   MET-172  7.3 7.3 14.5 -19.9 164.0 161.8 300.4
 MET-172   THR-173  7.1 7.1 6.1 9.6 123.8 127.0 -274.2
 THR-173   THR-174  9.1 9.1 16.6 -6.7 153.9 151.1 -160.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-212   ALA-213  12.7 12.7 -2.5 9.7 72.8 71.3 -54.0
 ALA-213   VAL-214  13.8 14.0 -2.0 4.2 95.8 96.3 62.0
 VAL-214   GLY-215  11.0 11.3 -1.1 8.4 148.1 144.2 253.8
 GLY-215   LYS-216  12.3 12.9 -1.3 1.8 85.3 82.0 6.1
 LYS-216   VAL-217  15.8 16.2 -0.3 -3.4 59.0 64.4 -55.2
 VAL-217   LEU-218  15.1 15.3 10.9 -14.1 57.6 53.3 -140.8
 LEU-218   PRO-219  13.2 13.3 -10.5 9.5 151.0 149.4 71.5
 PRO-219   GLU-220  14.5 14.6 -0.3 -9.5 133.5 133.7 -321.7
 GLU-220   LEU-221  12.2 12.1 17.3 -15.0 90.7 96.4 125.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-234   PRO-235  11.5 11.6 5.9 -1.4 100.9 102.7 4.2
 PRO-235   ASN-236  10.8 10.7 -4.4 0.9 116.2 115.0 9.7
 ASN-236   VAL-237  7.8 7.8 -5.8 17.9 125.6 124.7 510.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-245   LEU-246  3.2 3.2 -9.7 15.6 81.2 77.3 -267.0
 LEU-246   GLU-247  3.9 4.0 -9.0 -0.9 19.6 15.7 329.2
 GLU-247   LYS-248  5.1 4.9 7.3 -3.1 95.1 97.6 -39.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-262   ALA-263  13.8 13.9 7.0 -8.8 168.8 168.4 70.7
 ALA-263   GLU-264  12.6 12.9 -3.1 -5.2 59.6 59.2 96.3
 GLU-264   GLY-265  16.3 16.5 8.5 4.2 76.1 69.1 17.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-266   MET-267  17.2 17.4 12.2 -18.1 58.6 59.0 -261.7
 MET-267   LYS-268  13.8 14.2 -1.4 13.4 163.1 161.6 547.4
 LYS-268   GLY-269  14.8 15.1 -0.4 -0.7 128.0 126.4 -42.9
 GLY-269   VAL-270  13.3 13.3 -11.0 19.0 70.0 69.0 -190.1
 VAL-270   LEU-271  11.1 11.2 -3.1 1.1 72.5 76.3 36.6
 LEU-271   GLY-272  9.0 9.1 -4.3 10.2 120.0 119.5 -13.6
 LEU-271   GLY-272  9.0 9.1 -4.3 10.2 120.0 119.5 -13.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-271   GLY-272  9.0 9.1 -4.3 10.2 120.0 119.5 -13.6
 LEU-271   GLY-272  9.0 9.1 -4.3 10.2 120.0 119.5 -13.6
 GLY-272   TYR-273  8.7 8.8 4.8 -6.7 116.6 120.9 41.5
 TYR-273   THR-274  9.6 9.6 0.9 -0.7 47.5 46.8 -2.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-281   ASP-282  4.6 4.5 7.2 -4.2 92.3 93.7 38.0
 ASP-282   PHE-283  4.4 4.3 -7.2 7.9 111.2 109.5 -47.0
 PHE-283   ASN-284  1.2 1.3 5.3 -6.5 120.0 121.6 145.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-290   VAL-291  4.8 4.8 -2.5 5.0 100.9 101.7 8.4
 VAL-291   PHE-292  4.6 4.6 -1.5 -2.6 53.1 53.0 29.5
 PHE-292   ASP-293  5.4 5.5 -7.0 11.2 116.6 115.1 -13.1
 ASP-293   ALA-294  7.1 7.0 4.5 -2.9 137.1 135.9 7.7
 ALA-294   LYS-295  10.1 10.1 -0.4 -5.9 87.2 82.1 -8.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-302   ASN-303  11.3 11.3 -15.2 12.2 105.7 101.8 -85.9
 ASN-303   PHE-304  7.7 7.7 14.7 -19.2 115.1 116.8 145.9
 PHE-304   VAL-305  7.6 7.5 -3.7 4.0 18.9 19.8 -92.3
 VAL-305   LYS-306  7.4 7.4 4.9 3.6 130.2 130.2 -176.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-311   ASP-312  3.2 2.9 -0.6 7.2 36.9 37.8 -137.7
 ASP-312   ASN-313  4.6 4.5 9.0 -7.7 77.5 72.5 -6.2
 ASN-313   GLU-314  8.0 7.9 0.5 -4.2 133.1 126.2 150.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees