Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-56   GLU-57  2.4 2.2 0.1 0.9 57.4 62.0 -3.3
 GLU-57   LEU-58  3.5 4.1 7.6 -2.4 19.6 13.9 34.3
 LEU-58   LEU-59  2.6 3.2 1.0 3.9 83.7 79.9 -22.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-88   ALA-89  13.8 14.0 39.3 -13.2 118.3 111.7 -90.9
 ALA-89   GLU-90  16.4 16.6 15.3 50.8 134.1 113.6 -197.2
 GLU-90   ASN-91  14.1 14.4 148.8 70.6 99.1 38.4 -243.3
 ASN-91   VAL-92  10.2 14.9 82.1 95.7 32.1 73.8 976.0
 VAL-92   SER-93  9.7 12.1 24.8 49.6 78.7 100.8 95.4
 SER-93   ARG-94  11.5 11.3 -64.1 10.1 145.4 153.5 -354.2
 ARG-94   PRO-95  12.4 12.7 -4.1 -8.1 116.9 117.5 -76.1
 PRO-95   GLU-96  9.4 9.8 5.7 -7.4 54.7 64.4 -33.5
 GLU-96   LEU-97  7.3 7.4 -3.1 -1.4 145.2 143.5 5.8
 LEU-97   LEU-98  10.3 10.2 11.4 -8.5 48.8 38.2 14.1
 LEU-98   LEU-99  10.1 10.1 2.5 -0.7 68.0 66.0 13.0
 LEU-99   LEU-100  6.4 6.4 2.6 0.3 49.2 58.9 42.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-103   PRO-104  3.2 3.3 -7.3 -5.5 159.0 162.1 -43.6
 PRO-104   SER-105  3.1 3.1 22.9 -9.8 65.2 61.4 57.0
 SER-105   HIS-106  4.8 4.8 -7.2 6.5 93.7 104.1 15.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-112   TRP-113  4.3 4.8 -17.0 13.7 109.7 115.5 -26.5
 TRP-113   ARG-114  4.8 5.0 -14.2 -5.4 72.7 71.1 -1.8
 ARG-114   THR-115  8.2 8.1 7.8 -15.3 41.5 51.1 -15.7
 THR-115   VAL-116  10.0 10.6 17.2 -4.6 79.0 49.0 68.4
 VAL-116   ASN-117  9.3 9.8 18.3 -9.4 144.1 116.8 24.9
 ASN-117   HIS-118  9.7 10.7 -18.6 84.4 67.0 76.0 -82.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees