Glutamate Receptor 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  5.8 5.9 -11.4 -2.6 59.6 57.0 49.9
 LEU-109   GLY-110  2.2 2.3 7.6 3.0 48.7 52.1 28.1
 GLY-110   ILE-111  1.5 1.6 -10.4 -2.4 58.0 53.2 51.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  6.9 6.9 7.4 -15.4 137.6 141.0 42.1
 ASP-216   SER-217  3.6 3.6 -4.0 4.3 110.7 111.0 10.4
 SER-217   LYS-218  0.7 0.7 3.1 -21.8 104.8 108.8 16.6
 LYS-218   GLY-219  3.5 3.5 14.6 -10.0 55.7 47.3 1.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees