Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-284   LEU-285  17.9 18.2 22.9 4.3 151.9 144.6 -1201.3
 LEU-285   ASN-286  17.4 17.3 -10.0 12.4 43.0 43.9 -317.7
 ASN-286   GLN-287  19.0 19.0 4.3 -0.7 145.8 148.2 -132.6
 GLN-287   ARG-288  18.1 18.3 -7.5 4.8 85.6 86.4 150.6
 ARG-288   LYS-289  16.5 16.5 -2.8 2.0 124.8 120.1 37.4
 ARG-288   LYS-289  16.5 16.5 -2.8 2.0 124.8 120.1 37.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-288   LYS-289  16.5 16.5 -2.8 2.0 124.8 120.1 37.4
 ARG-288   LYS-289  16.5 16.5 -2.8 2.0 124.8 120.1 37.4
 LYS-289   LEU-290  14.2 14.2 -3.5 3.9 66.5 62.9 150.9
 LEU-290   VAL-291  13.5 13.6 -4.1 1.3 46.8 46.2 -20.8
 VAL-291   ALA-292  12.0 12.2 6.9 -11.4 66.7 68.3 -170.6
 ALA-292   ARG-293  10.4 10.3 4.9 -0.7 68.5 66.9 300.4
 ARG-293   ARG-294  8.5 8.6 2.2 0.8 134.2 137.0 -127.0
 ARG-294   ALA-295  7.8 7.9 -5.4 1.2 65.8 66.7 104.2
 ALA-295   LEU-296  6.3 6.3 3.3 -0.1 55.3 54.5 26.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-297   GLU-298  2.9 2.9 4.9 -5.8 49.7 48.6 -15.4
 ARG-300   LYS-301  5.2 5.2 -8.1 0.8 48.1 46.0 429.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-304   GLY-305  11.7 11.7 -4.6 6.7 54.9 53.5 -43.3
 GLY-305   ASN-306  10.7 10.5 -5.8 4.3 88.9 86.0 -108.5
 ASN-306   VAL-307  12.8 12.6 14.2 -22.9 92.4 94.6 68.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-308   VAL-309  15.3 15.5 5.7 -3.0 114.7 117.0 -63.5
 VAL-309   GLY-310  18.3 18.2 2.9 7.6 64.6 66.9 388.4
 GLY-310   ILE-311  17.9 17.7 -5.7 10.4 53.0 52.6 -41.3
 ILE-311   ALA-312  16.1 16.3 -11.7 -13.9 61.5 54.4 847.8
 ALA-312   ASP-313  12.9 12.9 21.4 -10.6 146.2 128.6 -314.3
 ASP-313   GLY-314  14.8 14.6 15.1 -20.9 158.2 174.1 138.9
 GLY-314   ILE-315  13.6 13.8 15.3 -3.0 102.9 103.0 -295.7
 ILE-315   GLY-316  9.9 10.1 16.0 -8.2 145.0 139.5 -276.4
 GLY-316   LEU-317  10.7 10.7 6.4 -7.1 148.1 149.7 11.3
 LEU-317   VAL-318  11.5 11.4 4.1 -1.3 95.6 94.5 -44.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-381   ASP-382  13.6 13.6 -5.1 4.0 29.9 31.1 -131.8
 ASP-382   GLN-383  12.9 13.0 2.8 0.6 97.2 98.2 10.8
 GLN-383   HIS-384  11.1 11.1 -5.5 -1.0 85.0 86.9 -127.9
 HIS-384   GLY-385  7.9 7.8 8.1 6.4 26.4 29.4 608.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-411   ILE-412  5.2 5.0 -3.8 1.9 90.7 90.5 -61.8
 ILE-412   ILE-413  6.1 6.1 0.8 -0.5 76.3 75.8 15.0
 ILE-413   PHE-414  6.3 6.3 -2.0 1.0 84.6 84.6 -8.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-423   LYS-424  25.8 25.8 -3.0 0.2 6.6 6.9 155.4
 LYS-424   THR-425  26.5 26.5 4.0 -9.1 99.2 101.0 -393.7
 THR-425   GLU-426  24.2 24.1 -0.6 -12.8 2.3 7.1 764.9
 GLU-426   ILE-427  24.1 23.6 -3.0 10.7 84.1 82.2 -241.0
 ILE-427   ALA-428  21.5 21.0 -9.0 3.5 33.7 35.1 296.1
 ALA-428   ASP-429  23.3 23.3 -12.9 11.4 97.1 96.1 -133.7
 ASP-429   GLY-430  23.5 23.6 0.8 -1.5 60.5 61.0 -60.7
 GLY-430   LYS-431  20.1 20.2 6.8 -11.3 6.2 6.9 -201.0
 LYS-431   LEU-432  21.3 21.4 0.6 -3.5 75.4 71.3 328.8
 LEU-432   ASN-433  21.2 21.3 -11.0 6.6 108.6 107.8 -89.5
 ASN-433   ILE-434  24.8 24.8 -1.5 -2.8 118.4 120.3 -33.4
 ILE-434   VAL-435  25.5 25.6 -6.3 18.1 82.4 82.8 186.7
 VAL-435   GLN-436  28.8 28.6 -20.3 4.8 133.1 140.9 -590.3
 GLN-436   GLU-437  29.4 29.3 6.3 -0.3 51.1 50.1 233.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-447   PRO-448  16.3 16.6 15.4 -16.7 45.8 43.8 -15.0
 PRO-448   GLU-449  19.3 19.4 5.5 5.6 91.4 93.7 350.2
 GLU-449   ILE-450  18.4 18.5 12.2 -14.6 136.2 136.5 -113.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-458   GLU-459  3.8 3.8 0.8 -2.1 115.7 115.8 -35.6
 GLU-459   ARG-460  6.9 6.9 -1.0 1.8 133.4 134.0 55.1
 ARG-460   GLY-461  9.0 9.0 1.0 8.3 47.4 44.2 364.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-523   PHE-524  6.8 6.7 0.3 -2.8 37.2 36.5 -162.0
 PHE-524   VAL-525  4.8 4.8 4.1 -6.3 105.9 103.5 134.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees