5'-Nucleotidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-332   ASN-333  12.9 13.0 0.5 -46.8 32.3 29.0 -507.1
 ASN-333   TYR-334  12.6 12.6 65.0 -35.0 87.8 72.7 347.3
 GLN-337   GLU-338  11.3 11.8 -6.1 9.1 79.0 64.0 -38.3
 GLU-338   LEU-339  11.0 11.5 3.5 1.8 38.9 36.1 64.0
 LEU-339   GLY-340  9.2 9.6 -9.5 15.9 90.4 89.5 19.3
 GLY-340   LYS-341  11.8 11.9 -13.6 18.6 13.6 5.2 -42.5
 LYS-341   THR-342  13.3 13.1 9.9 3.8 102.8 99.1 86.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-401   ASN-402  12.3 12.2 -23.9 24.8 79.5 75.1 13.0
 ASN-402   ASN-403  12.0 11.9 -5.1 -6.7 38.6 44.8 71.4
 ASN-403   GLY-404  15.1 15.1 4.5 -15.8 138.6 135.5 130.4
 GLY-404   THR-405  13.2 12.5 22.9 -3.0 136.1 144.7 -288.8
 THR-405   ILE-406  11.4 11.1 4.6 4.2 98.5 102.7 34.2
 ILE-406   THR-407  8.2 8.0 4.8 -10.2 125.4 124.4 0.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees