Peptidyl-Prolyl Cis-Trans Isomerase Slyd

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-64   PRO-65  9.8 9.6 16.3 -14.7 94.8 92.8 -4.5
 PRO-65   HIS-66  8.6 8.1 -5.3 -6.5 80.8 73.4 25.7
 HIS-66   ASP-67  5.9 5.8 -0.9 -1.5 155.5 144.6 -7.4
 ASP-67   PRO-68  3.8 3.8 6.0 -3.1 93.1 102.0 3.5
 PRO-68   GLU-69  5.4 6.3 0.2 -7.6 74.5 80.6 -10.3
 GLU-69   GLY-70  3.5 5.1 5.8 -4.0 139.8 141.5 9.2
 GLY-70   VAL-71  2.8 3.7 -2.6 -0.6 56.4 46.1 11.1
 VAL-71   GLN-72  6.2 6.9 18.7 -12.8 59.5 65.0 34.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-95   MET-96  12.2 11.6 -5.2 1.4 58.7 38.6 -2.5
 MET-96   GLU-97  14.5 12.9 1.2 -3.0 104.2 93.2 -6.9
 GLU-97   GLY-98  15.7 15.4 46.5 -46.7 31.7 44.7 -5.0
 GLY-98   ASN-99  16.3 16.8 4.7 -22.9 56.9 23.5 -87.6
 ASN-99   PRO-100  13.9 15.2 -4.8 -7.9 139.2 119.3 -69.2
 PRO-100   MET-101  12.2 13.3 4.9 17.3 102.9 91.5 -19.6
 MET-101   PRO-102  9.1 9.5 81.6 -15.3 37.5 47.5 324.1
 PRO-102   LEU-103  8.0 7.0 -8.7 2.1 81.1 67.3 -27.1
 LEU-103   THR-104  6.1 5.9 -11.3 5.3 148.4 147.0 -37.4
 THR-104   VAL-105  5.3 5.1 0.6 -0.2 105.7 101.7 -18.0
 VAL-105   VAL-106  8.5 8.4 -4.2 -0.3 92.5 93.8 -17.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-114   VAL-115  11.7 12.0 -1.8 4.1 119.1 111.4 26.2
 VAL-115   ASP-116  8.3 8.7 -3.2 -3.9 62.2 55.8 34.3
 ASP-116   PHE-117  4.6 5.1 3.3 -6.1 88.5 90.8 3.2
 PHE-117   ASN-118  3.6 3.6 -1.7 1.5 92.2 84.3 8.0
 ASN-118   HIS-119  0.9 0.2 1.5 2.9 30.6 34.9 21.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees