Capsid Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-1033   ASP-1034  16.5 16.4 -10.4 10.9 52.7 55.1 -48.6
 ASP-1034   PRO-1035  18.0 17.5 8.6 -12.7 117.8 112.6 1.4
 PRO-1035   VAL-1036  16.3 15.8 13.0 -11.0 142.6 150.4 -10.0
 VAL-1036   ALA-1037  13.7 13.4 9.9 -10.2 135.6 129.4 23.7
 ALA-1037   GLY-1038  13.6 13.4 -3.6 4.8 81.3 80.7 -4.8
 GLY-1038   SER-1039  11.2 11.0 1.5 -6.0 162.4 165.0 38.0
 SER-1039   SER-1040  10.3 10.4 -4.2 9.0 49.0 44.8 -38.5
 SER-1040   THR-1041  13.0 13.1 -9.2 13.9 69.6 59.1 -32.4
 THR-1041   ALA-1042  11.1 11.1 -4.4 15.3 43.7 41.5 -54.1
 ALA-1042   VAL-1043  7.8 8.0 -49.9 38.1 41.0 38.8 72.9
 VAL-1043   ALA-1044  9.6 10.3 5.9 3.5 155.3 160.6 -66.1
 ALA-1044   THR-1045  9.4 10.2 -37.6 15.0 85.2 67.8 72.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-1070   SER-1071  4.5 4.7 3.8 -0.5 154.3 153.2 -0.4
 SER-1071   PRO-1072  6.1 6.2 0.5 -5.4 118.5 121.2 20.1
 PRO-1072   ASN-1073  6.1 6.1 2.1 -6.9 74.0 78.6 -19.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-1084   LEU-1085  2.6 3.0 2.0 -3.1 129.3 127.8 17.9
 LEU-1085   GLY-1086  1.1 0.9 -7.7 3.8 39.4 41.1 37.7
 GLY-1086   PRO-1087  1.9 2.1 5.1 0.7 83.6 81.6 26.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-1109   ARG-1110  7.9 7.5 -4.4 2.7 33.5 29.1 48.4
 ARG-1110   ILE-1111  9.5 9.0 -14.1 19.9 48.9 48.5 0.5
 ILE-1111   MET-1112  7.7 6.9 -4.7 14.4 32.8 38.1 -87.9
 MET-1112   LEU-1113  9.3 8.9 -11.8 -10.3 43.8 30.9 165.6
 LEU-1113   ALA-1114  8.1 8.1 41.0 -91.6 133.5 126.6 397.7
 ALA-1114   GLY-1115  10.3 10.3 -33.5 35.9 29.5 32.0 -15.4
 GLY-1115   ASN-1116  8.5 8.5 -14.3 62.4 37.3 36.2 -398.7
 ASN-1116   ALA-1117  9.5 9.8 -34.6 30.9 65.9 72.5 -53.9
 ALA-1117   PHE-1118  9.6 10.3 -4.7 5.8 60.1 54.1 -18.8
 PHE-1118   THR-1119  6.4 7.3 -1.4 6.8 128.4 118.3 -8.8
 THR-1119   ALA-1120  4.5 4.7 41.6 -30.9 76.1 73.8 40.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-1121   LYS-1122  4.2 3.8 -12.4 3.1 37.6 30.9 85.4
 LYS-1122   ILE-1123  6.0 5.5 5.5 3.0 140.2 136.9 -80.4
 ILE-1123   ILE-1124  4.8 4.5 12.0 -15.2 134.1 129.2 91.6
 ILE-1124   VAL-1125  6.9 6.8 0.8 2.5 28.6 24.7 75.6
 ILE-1124   VAL-1125  6.9 6.8 0.8 2.5 28.6 24.7 75.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-1124   VAL-1125  6.9 6.8 0.8 2.5 28.6 24.7 75.6
 ILE-1124   VAL-1125  6.9 6.8 0.8 2.5 28.6 24.7 75.6
 VAL-1125   SER-1126  6.0 6.1 10.0 -6.4 53.1 56.0 -2.4
 SER-1126   CYS-1127  8.2 8.5 -0.8 -0.6 161.9 161.4 -12.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-1155   ASP-1156  14.0 13.7 -37.1 18.8 9.7 3.6 183.4
 ASP-1156   PRO-1157  14.6 14.5 -25.6 22.7 57.3 61.9 -21.4
 PRO-1157   ILE-1158  12.3 11.7 -27.4 35.3 75.5 64.4 -21.7
 ILE-1158   GLU-1159  10.8 10.4 -3.9 7.4 3.8 8.7 -26.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-1171   ASN-1172  2.4 2.4 9.5 -13.1 61.6 58.5 -23.0
 ASN-1172   ASN-1173  3.0 3.2 5.1 -22.2 137.6 136.0 150.6
 ASN-1173   ASP-1174  5.5 6.0 -35.9 35.9 81.2 90.4 56.7
 ASP-1174   ARG-1175  7.4 8.6 66.0 -4.9 161.1 147.9 -563.1
 ARG-1175   ASN-1176  7.9 10.7 -19.6 22.7 78.3 96.3 68.8
 ASN-1176   GLN-1177  10.2 10.7 0.8 -20.6 83.5 115.0 71.0
 GLN-1177   GLN-1178  7.8 7.7 -10.8 -29.1 25.9 12.2 324.1
 GLN-1178   THR-1179  8.4 8.2 5.6 9.5 91.5 101.8 -26.2
 THR-1179   MET-1180  5.7 5.6 5.1 -9.3 158.0 155.4 29.1
 MET-1180   ARG-1181  6.3 6.3 7.8 2.2 133.0 135.9 -66.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-1200   VAL-1201  9.9 9.7 -6.8 -7.3 43.4 52.0 179.6
 VAL-1201   VAL-1202  8.4 8.0 5.4 1.5 112.3 120.6 9.1
 VAL-1202   ALA-1203  6.9 6.8 -0.5 -7.0 20.9 24.8 46.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees