Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-275   ASP-276  19.4 19.2 3.8 -0.7 77.1 73.5 -31.4
 PRO-284   LEU-285  23.2 23.6 26.9 1.5 144.2 129.8 -691.2
 LEU-285   ASN-286  21.9 21.9 -20.8 31.3 23.7 25.1 -280.1
 ASN-286   GLN-287  21.7 21.9 8.8 -6.3 118.1 120.8 140.9
 GLN-287   ARG-288  19.2 19.5 -8.8 6.8 115.4 116.9 -31.8
 ARG-288   LYS-289  17.7 17.9 -1.1 0.6 140.7 134.0 -20.5
 LYS-289   LEU-290  17.1 17.2 0.1 -0.9 109.2 113.1 111.4
 LEU-290   VAL-291  15.9 16.1 -5.1 4.1 77.0 76.5 13.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-293   ARG-294  12.0 12.1 1.8 -0.9 118.7 118.4 -35.8
 ARG-294   ALA-295  10.0 10.1 -3.5 -0.3 95.3 96.5 12.4
 ALA-295   LEU-296  7.6 7.6 1.9 3.6 30.6 29.4 74.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-300   LYS-301  1.8 1.9 -2.9 -1.8 23.7 21.3 286.1
 LYS-301   GLY-302  1.9 2.2 -4.5 13.0 86.7 86.7 -93.8
 GLY-302   ALA-303  3.5 3.6 -12.1 19.5 141.9 138.9 374.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-305   ASN-306  7.8 7.7 -9.3 7.0 86.7 84.5 -179.0
 ASN-306   VAL-307  10.8 10.7 17.5 -27.7 122.8 123.6 19.9
 VAL-307   GLY-308  11.7 11.8 -14.5 10.3 67.3 67.6 428.5
 GLY-308   VAL-309  14.4 14.5 6.4 -4.4 87.9 89.0 82.7
 GLY-308   VAL-309  14.4 14.5 6.4 -4.4 87.9 89.0 82.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-308   VAL-309  14.4 14.5 6.4 -4.4 87.9 89.0 82.7
 GLY-308   VAL-309  14.4 14.5 6.4 -4.4 87.9 89.0 82.7
 VAL-309   GLY-310  17.6 17.5 2.5 10.9 38.1 39.5 447.7
 GLY-310   ILE-311  17.3 17.2 -1.8 12.2 71.2 72.8 -61.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-371   ASP-372  10.1 10.1 3.0 3.1 106.7 107.9 9.8
 ASP-372   VAL-373  6.9 7.0 6.8 -16.9 130.3 133.1 289.5
 VAL-373   CYS-374  5.3 5.4 6.7 -6.2 99.9 95.1 -138.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-376   SER-377  11.3 11.3 -1.2 -1.2 127.2 131.1 -102.2
 SER-377   PHE-378  13.3 13.3 -6.1 9.5 156.8 152.4 218.9
 PHE-378   ALA-379  13.2 13.2 2.9 5.3 59.0 59.4 293.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-411   ILE-412  4.8 4.6 -3.4 1.4 77.1 76.3 34.7
 ILE-412   ILE-413  5.5 5.4 3.2 -0.2 106.2 105.3 -17.8
 ILE-413   PHE-414  5.1 5.0 -0.3 -2.9 68.7 66.9 -41.9
 PHE-414   CYS-415  7.8 7.7 -0.6 1.7 82.3 84.7 -91.4
 PHE-414   CYS-415  7.8 7.7 -0.6 1.7 82.3 84.7 -91.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-414   CYS-415  7.8 7.7 -0.6 1.7 82.3 84.7 -91.4
 PHE-414   CYS-415  7.8 7.7 -0.6 1.7 82.3 84.7 -91.4
 CYS-415   GLY-416  10.4 10.3 2.8 5.5 60.3 58.9 231.5
 GLY-416   THR-417  13.4 13.3 16.2 -22.5 64.0 67.0 -150.6
 THR-417   LEU-418  15.3 15.1 -1.0 6.3 157.2 159.6 193.1
 LEU-418   THR-419  14.1 14.1 -8.2 -4.0 135.2 130.6 -502.2
 THR-419   ALA-420  17.2 17.3 3.8 -19.0 124.5 126.0 366.1
 ALA-420   GLY-421  19.8 20.1 -15.7 7.6 119.8 121.6 -315.3
 GLY-421   SER-422  23.5 23.9 5.3 17.7 105.4 97.5 -212.3
 SER-422   LEU-423  25.7 26.0 -20.2 7.5 94.3 86.6 33.3
 LEU-423   LYS-424  23.4 23.3 -12.5 4.4 35.2 35.0 326.9
 LYS-424   THR-425  25.4 25.3 -1.2 0.1 83.2 79.7 -446.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-444   ARG-445  10.7 10.7 0.7 2.6 65.8 65.3 3.2
 ARG-445   GLU-446  8.4 8.5 1.3 -8.9 107.1 108.1 -30.8
 GLU-446   LEU-447  10.2 10.2 -2.1 -7.5 59.1 60.8 203.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-465   TYR-466  2.2 2.1 0.0 0.1 71.3 71.4 -14.5
 TYR-466   ILE-467  5.6 5.6 11.2 -10.5 73.3 73.8 86.1
 ILE-467   THR-468  8.3 8.4 -1.3 0.2 70.7 70.9 37.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-517   ILE-518  19.8 20.1 -2.6 11.3 51.8 49.8 -114.1
 ILE-518   ASP-519  21.9 22.0 -1.4 -1.0 45.7 49.6 171.5
 ASP-519   ALA-520  23.0 23.0 4.7 -5.9 164.6 165.2 81.1
 ALA-520   ALA-521  21.7 21.6 4.3 3.3 94.3 95.6 -39.0
 GLY-523   PHE-524  15.3 15.2 -1.3 -13.2 113.4 111.4 -247.4
 GLY-523   PHE-524  15.3 15.2 -1.3 -13.2 113.4 111.4 -247.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-523   PHE-524  15.3 15.2 -1.3 -13.2 113.4 111.4 -247.4
 GLY-523   PHE-524  15.3 15.2 -1.3 -13.2 113.4 111.4 -247.4
 PHE-524   VAL-525  12.0 11.9 -0.1 1.7 44.5 46.8 9.5
 VAL-525   LEU-526  9.9 9.5 8.0 4.3 64.9 56.0 514.3
 LEU-526   PRO-527  6.2 5.9 1.4 4.7 90.1 91.0 -192.6
 PRO-527   GLU-528  6.7 6.9 3.5 -3.5 108.2 107.3 -83.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees